Thomas Zichner
Thomas Zichner
Distinguished Scientist, Boehringer Ingelheim RCV, Austria
Verified email at embl.de
Title
Cited by
Cited by
Year
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75-81, 2015
11942015
DELLY: structural variant discovery by integrated paired-end and split-read analysis
T Rausch, T Zichner, A Schlattl, AM Stütz, V Benes, JO Korbel
Bioinformatics 28 (18), i333-i339, 2012
9672012
Dissecting the genomic complexity underlying medulloblastoma
DTW Jones, N Jäger, M Kool, T Zichner, B Hutter, M Sultan, YJ Cho, ...
Nature 488 (7409), 100-105, 2012
6972012
Genome Sequencing of Pediatric Medulloblastoma Links Catastrophic DNA Rearrangements with TP53 Mutations
T Rausch, DTW Jones, M Zapatka, AM Stütz, T Zichner, J Weischenfeldt, ...
Cell 148 (1), 59-71, 2012
6352012
Subgroup-specific structural variation across 1,000 medulloblastoma genomes
PA Northcott, DJH Shih, J Peacock, L Garzia, AS Morrissy, T Zichner, ...
Nature 488 (7409), 49-56, 2012
6292012
Recurrent somatic alterations of FGFR1 and NTRK2 in pilocytic astrocytoma
DTW Jones, B Hutter, N Jäger, A Korshunov, M Kool, HJ Warnatz, ...
Nature genetics 45 (8), 927-932, 2013
5202013
Epigenomic alterations define lethal CIMP-positive ependymomas of infancy
SC Mack, H Witt, RM Piro, L Gu, S Zuyderduyn, AM Stütz, X Wang, ...
Nature 506 (7489), 445-450, 2014
4202014
Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines
W Huang, A Massouras, Y Inoue, J Peiffer, M Ràmia, AM Tarone, ...
Genome research 24 (7), 1193-1208, 2014
4062014
The genomic and transcriptomic landscape of a HeLa cell line
JJM Landry, PT Pyl, T Rausch, T Zichner, MM Tekkedil, AM Stütz, A Jauch, ...
G3: Genes, Genomes, Genetics 3 (8), 1213-1224, 2013
4002013
Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma
PA Northcott, C Lee, T Zichner, AM Stütz, S Erkek, D Kawauchi, DJH Shih, ...
Nature 511 (7510), 428-434, 2014
3472014
The whole-genome landscape of medulloblastoma subtypes
PA Northcott, I Buchhalter, AS Morrissy, V Hovestadt, J Weischenfeldt, ...
Nature 547 (7663), 311-317, 2017
2972017
Integrative genomic analyses reveal an androgen-driven somatic alteration landscape in early-onset prostate cancer
J Weischenfeldt, R Simon, L Feuerbach, K Schlangen, D Weichenhan, ...
Cancer cell 23 (2), 159-170, 2013
2922013
Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking
J Weischenfeldt, T Dubash, AP Drainas, BR Mardin, Y Chen, AM Stütz, ...
Nature genetics 49 (1), 65-74, 2017
1652017
Shadow enhancers are pervasive features of developmental regulatory networks
E Cannavò, P Khoueiry, DA Garfield, P Geeleher, T Zichner, ...
Current Biology 26 (1), 38-51, 2016
1252016
Genomics and drug profiling of fatal TCF3-HLF−positive acute lymphoblastic leukemia identifies recurrent mutation patterns and therapeutic options
U Fischer, M Forster, A Rinaldi, T Risch, S Sungalee, HJ Warnatz, ...
Nature genetics 47 (9), 1020-1029, 2015
1052015
Identifying the unknowns by aligning fragmentation trees
F Rasche, K Scheubert, F Hufsky, T Zichner, M Kai, A Svatoš, S Böcker
Analytical chemistry 84 (7), 3417-3426, 2012
1022012
Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort
SM Waszak, PA Northcott, I Buchhalter, GW Robinson, C Sutter, ...
The Lancet Oncology 19 (6), 785-798, 2018
912018
Algorithm engineering for color-coding with applications to signaling pathway detection
F Hüffner, S Wernicke, T Zichner
Algorithmica 52 (2), 114-132, 2008
782008
Recurrent MET fusion genes represent a drug target in pediatric glioblastoma
S Bender, J Gronych, HJ Warnatz, B Hutter, S Groebner, M Ryzhova, ...
Nature medicine 22 (11), 1314, 2016
772016
Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity
SM Waszak, Y Hasin, T Zichner, T Olender, I Keydar, M Khen, AM Stütz, ...
PLoS Comput Biol 6 (11), e1000988, 2010
672010
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