| High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries C Jain, LM Rodriguez-R, AM Phillippy, KT Konstantinidis, S Aluru Nature communications 9 (1), 5114, 2018 | 528 | 2018 |
| Critical Assessment of Metagenome Interpretation- a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 334 | 2017 |
| A fast approximate algorithm for mapping long reads to large reference databases C Jain, A Dilthey, S Koren, S Aluru, AM Phillippy International Conference on Research in Computational Molecular Biology, 2017 | 48 | 2017 |
| A Fast Adaptive Algorithm for Computing Whole-Genome Homology Maps C Jain, S Koren, A Dilthey, A Phillippy, S Aluru Bioinformatics 34 (17), i748–i756, 2018 | 30 | 2018 |
| A parallel connectivity algorithm for de Bruijn graphs in metagenomic applications P Flick, C Jain, T Pan, S Aluru Proceedings of the International Conference for High Performance Computing …, 2015 | 28 | 2015 |
| Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps AT Dilthey, C Jain, S Koren, AM Phillippy Nature communications 10 (1), 1-12, 2019 | 23 | 2019 |
| Kmerind: A flexible parallel library for k-mer indexing of biological sequences on distributed memory systems T Pan, P Flick, C Jain, Y Liu, S Aluru IEEE/ACM transactions on computational biology and bioinformatics, 2017 | 22 | 2017 |
| An Adaptive Parallel Algorithm for Computing Connected Components C Jain, P Flick, T Pan, O Green, S Aluru IEEE Transactions on Parallel and Distributed Systems, 2017 | 21 | 2017 |
| A comprehensive evaluation of long read error correction methods H Zhang, C Jain, S Aluru BMC genomics 21 (6), 1-15, 2020 | 17 | 2020 |
| On the Complexity of Sequence-to-Graph Alignment C Jain, H Zhang, Y Gao, S Aluru Journal of Computational Biology 27 (4), 640-654, 2020 | 16 | 2020 |
| Accelerating sequence alignment to graphs C Jain, S Misra, H Zhang, A Dilthey, S Aluru 2019 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2019 | 14 | 2019 |
| Weighted minimizer sampling improves long read mapping C Jain, A Rhie, H Zhang, C Chu, S Koren, A Phillippy Bioinformatics, i111–i118, 2020 | 13 | 2020 |
| Efficient detection of viral transmissions with next-generation sequencing data I Rytsareva, DS Campo, Y Zheng, S Sims, SV Thankachan, C Tetik, ... BMC genomics 18 (4), 1-7, 2017 | 9 | 2017 |
| Fine-grained GPU parallelization of pairwise local sequence alignment C Jain, S Kumar High Performance Computing (HiPC), 2014 21st International Conference on, 1 - 10, 2014 | 8 | 2014 |
| The structure, function, and evolution of a complete human chromosome 8 GA Logsdon, MR Vollger, PH Hsieh, Y Mao, MA Liskovykh, S Koren, ... bioRxiv, 2020 | 6 | 2020 |
| A Self-Correcting Connected Components Algorithm P Sao, O Green, C Jain, R Vuduc Proceedings of the ACM Workshop on Fault-Tolerance for HPC at Extreme Scale …, 2016 | 4 | 2016 |
| Biological and Environmental Research Exascale Requirements Review. An Office of Science review sponsored jointly by Advanced Scientific Computing Research and Biological and … A Arkin, DC Bader, R Coffey, K Antypas, D Bard, E Dart, S Dosanjh, ... US Department of Energy, Washington, DC (United States). Advanced Scientific …, 2016 | 3 | 2016 |
| A long read mapping method for highly repetitive reference sequences C Jain, A Rhie, N Hansen, S Koren, AM Phillippy bioRxiv, 2020 | 2 | 2020 |
| Validating paired-end read alignments in sequence graphs C Jain, H Zhang, A Dilthey, S Aluru 19th International Workshop on Algorithms in Bioinformatics (WABI 2019) 143 …, 2019 | 2 | 2019 |
| Long read mapping at scale: Algorithms and applications C Jain Georgia Institute of Technology, 2019 | | 2019 |
Srinivas AluruProfessor and Executive Director of Institute for Data Engineering and Science, Georgia TechVerified email at cc.gatech.edu
