| The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins D Kozakov, LE Grove, DR Hall, T Bohnuud, SE Mottarella, L Luo, B Xia, ... Nature protocols 10 (5), 733-755, 2015 | 575 | 2015 |
| Characterizing the impact of smoking and lung cancer on the airway transcriptome using RNA-Seq J Beane, J Vick, F Schembri, C Anderlind, A Gower, J Campbell, L Luo, ... Cancer prevention research 4 (6), 803-817, 2011 | 190 | 2011 |
| Exploring the structural origins of cryptic sites on proteins D Beglov, DR Hall, AE Wakefield, L Luo, KN Allen, D Kozakov, A Whitty, ... Proceedings of the National Academy of Sciences 115 (15), E3416-E3425, 2018 | 105 | 2018 |
| Ligand deconstruction: Why some fragment binding positions are conserved and others are not D Kozakov, DR Hall, S Jehle, L Luo, SO Ochiana, EV Jones, M Pollastri, ... Proceedings of the National Academy of Sciences 112 (20), E2585-E2594, 2015 | 81 | 2015 |
| Characterization of Ser338 phosphorylation for Raf-1 activation M Zang, J Gong, L Luo, J Zhou, X Xiang, W Huang, Q Huang, X Luo, ... Journal of biological chemistry 283 (46), 31429-31437, 2008 | 81 | 2008 |
| Assessment of microRNA differential expression and detection in multiplexed small RNA sequencing data JD Campbell, G Liu, L Luo, J Xiao, J Gerrein, B Juan-Guardela, J Tedrow, ... Rna 21 (2), 164-171, 2015 | 48 | 2015 |
| Distinct effects of knocking down MEK1 and MEK2 on replication of herpes simplex virus type 2 H Zhang, H Feng, L Luo, Q Zhou, Z Luo, Y Peng Virus research 150 (1-2), 22-27, 2010 | 41 | 2010 |
| A benchmark testing ground for integrating homology modeling and protein docking T Bohnuud, L Luo, SJ Wodak, AMJJ Bonvin, Z Weng, S Vajda, ... Proteins: Structure, Function, and Bioinformatics 85 (1), 10-16, 2017 | 35 | 2017 |
| Interaction energetics and druggability of the protein–protein interaction between Kelch-like ECH-Associated Protein 1 (KEAP1) and Nuclear Factor Erythroid 2 Like 2 (Nrf2) M Zhong, A Lynch, SN Muellers, S Jehle, L Luo, DR Hall, R Iwase, ... Biochemistry 59 (4), 563-581, 2019 | 33 | 2019 |
| RNA-Seq identifies SPGs as a ventral skeletal patterning cue in sea urchins ML Piacentino, DT Zuch, J Fishman, S Rose, EE Speranza, C Li, J Yu, ... Development 143 (4), 703-714, 2016 | 31 | 2016 |
| Conservation and covariance in small bacterial phosphoglycosyltransferases identify the functional catalytic core V Lukose, L Luo, D Kozakov, S Vajda, KN Allen, B Imperiali Biochemistry 54 (50), 7326-7334, 2015 | 25 | 2015 |
| The developmental transcriptome for Lytechinus variegatus exhibits temporally punctuated gene expression changes JD Hogan, JL Keenan, L Luo, J Ibn-Salem, A Lamba, D Schatzberg, ... Developmental biology 460 (2), 139-154, 2020 | 22 | 2020 |
| Genome-wide mutational signatures in low-coverage whole genome sequencing of cell-free DNA JCM Wan, D Stephens, L Luo, JR White, CM Stewart, B Rousseau, ... Nature Communications 13 (1), 4953, 2022 | 18 | 2022 |
| Characterizing the impact of smoking and lung cancer on the airway transcriptome using RNA-Seq. Cancer Prev Res (Phila) 2011; 4: 803–817. doi: 10.1158/1940-6207 J Beane, J Vick, F Schembri, C Anderlind, A Gower, J Campbell, L Luo, ... CAPR-11-0212.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 0 | 14 | |
| Comprehensive genomic profiling of the lung transcriptome in emphysema and idiopathic pulmonary fibrosis using RNA-Seq RL Kusko, J Brothers, G Liu, L Luo, BJ Guardela, J Tedrow, Y Aleksyev, ... BMC Proceedings 6, 1-2, 2012 | 5 | 2012 |
| Dysregulation of microRNA-mRNA regulatory networks in the bronchial airway epithelium of smokers with lung cancer AB Pavel, JD Campbell, G Liu, S Zhang, H Liu, L Luo, J Xiao, K Porta, ... Cancer Research 75 (15_Supplement), 3077-3077, 2015 | 1 | 2015 |
| Bronchial airway microRNA expression associated with chronic obstructive pulmonary disease K Steiling, TW Wang, JD Campbell, G Liu, A LeClerc, Y Alekseyev, L Luo, ... A27. SMOKE SIGNALS ON PULMONARY CELLS, A1201-A1201, 2013 | 1 | 2013 |
| Characterizing the small RNA transcriptome associated with COPD and ILD using next-generation sequencing JD Campbell, L Luo, G Liu, J Xiao, J Gerrein, BJ Guardela, J Tedrow, ... BMC Proceedings 6, 1-2, 2012 | 1 | 2012 |
| Effects of the host cell ERK signal transduction pathway on replication of type II herpes simplex virus (HSV-2) L Luo, J Tu, H Feng CHINESE JOURNAL OF MICROBIOLOGY AND IMMUNOLOGY-BEIJING- 27 (9), 779, 2007 | 1 | 2007 |
| Integrative genetic and genomic networks identify microRNA associated with COPD and ILD AB Pavel, C Garrison, L Luo, G Liu, D Taub, J Xiao, B Juan-Guardela, ... Scientific Reports 13 (1), 13076, 2023 | | 2023 |
Dima KozakovProfessor, Department of Applied Mathematics and StatisticsVerified email at stonybrook.edu
