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Ted Natoli
Ted Natoli
Unknown affiliation
Verified email at fl89inc.com
Title
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Cited by
Year
A next generation connectivity map: L1000 platform and the first 1,000,000 profiles
A Subramanian, R Narayan, SM Corsello, DD Peck, TE Natoli, X Lu, ...
Cell 171 (6), 1437-1452. e17, 2017
24952017
A metastasis map of human cancer cell lines
X Jin, Z Demere, K Nair, A Ali, GB Ferraro, T Natoli, A Deik, L Petronio, ...
Nature 588 (7837), 331-336, 2020
2492020
Assessment of network module identification across complex diseases
S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ...
Nature methods 16 (9), 843-852, 2019
2402019
High-throughput phenotyping of lung cancer somatic mutations
AH Berger, AN Brooks, X Wu, Y Shrestha, C Chouinard, F Piccioni, ...
Cancer cell 30 (2), 214-228, 2016
2102016
Evaluation of RNAi and CRISPR technologies by large-scale gene expression profiling in the Connectivity Map
I Smith, PG Greenside, T Natoli, DL Lahr, D Wadden, I Tirosh, R Narayan, ...
PLoS biology 15 (11), e2003213, 2017
2012017
Systematic functional interrogation of rare cancer variants identifies oncogenic alleles
E Kim, N Ilic, Y Shrestha, L Zou, A Kamburov, C Zhu, X Yang, R Lubonja, ...
Cancer discovery 6 (7), 714-726, 2016
1512016
An unbiased approach to identify endogenous substrates of “histone” deacetylase 8
DE Olson, ND Udeshi, NA Wolfson, CA Pitcairn, ED Sullivan, JD Jaffe, ...
ACS chemical biology 9 (10), 2210-2216, 2014
1002014
A library of phosphoproteomic and chromatin signatures for characterizing cellular responses to drug perturbations
L Litichevskiy, R Peckner, JG Abelin, JK Asiedu, AL Creech, JF Davis, ...
Cell systems 6 (4), 424-443. e7, 2018
762018
The GCTx format and cmap {Py, R, M, J} packages: resources for optimized storage and integrated traversal of annotated dense matrices
OM Enache, DL Lahr, TE Natoli, L Litichevskiy, D Wadden, C Flynn, ...
Bioinformatics 35 (8), 1427-1429, 2019
602019
GeNets: a unified web platform for network-based genomic analyses
T Li, A Kim, J Rosenbluh, H Horn, L Greenfeld, D An, A Zimmer, ...
Nature methods 15 (7), 543-546, 2018
532018
Morphology and gene expression profiling provide complementary information for mapping cell state
GP Way, T Natoli, A Adeboye, L Litichevskiy, A Yang, X Lu, JC Caicedo, ...
Cell systems 13 (11), 911-923. e9, 2022
512022
Chronic inflammation, neutrophil activity, and autoreactivity splits long COVID
MC Woodruff, KS Bonham, FA Anam, TA Walker, CE Faliti, Y Ishii, ...
Nature Communications 14 (1), 4201, 2023
322023
Open community challenge reveals molecular network modules with key roles in diseases
S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ...
bioRxiv, 265553, 2018
272018
The Carcinogenome Project: In Vitro Gene Expression Profiling of Chemical Perturbations to Predict Long-Term Carcinogenicity
A Li, X Lu, T Natoli, J Bittker, NS Sipes, A Subramanian, S Auerbach, ...
Environmental Health Perspectives 127 (4), 047002, 2019
252019
A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses
SM Gross, MA Dane, RL Smith, KL Devlin, IC McLean, DS Derrick, ...
Communications biology 5 (1), 1066, 2022
132022
Advancing computational biology and bioinformatics research through open innovation competitions
A Blasco, MG Endres, RA Sergeev, A Jonchhe, NJM Macaluso, ...
PloS one 14 (9), e0222165, 2019
102019
Small-molecule screen reveals pathways that regulate C4 secretion in stem cell-derived astrocytes
F Rapino, T Natoli, F Limone, E O’Connor, J Blank, M Tegtmeyer, W Chen, ...
Stem Cell Reports 18 (1), 237-253, 2023
62023
A LINCS microenvironment perturbation resource for integrative assessment of ligand-mediated molecular and phenotypic responses
SM Gross, MA Dane, RL Smith, K Devlin, I McLean, D Derrick, C Mills, ...
bioRxiv, 2021.08. 06.455429, 2021
52021
A metastasis map of human cancer cell lines (vol 588, pg 331, 2020)
X Jin, Z Demere, K Nair, A Ali, GB Ferraro, T Natoli, A Deik, L Petronio, ...
Nature 599 (7885), E7-E7, 2021
12021
Improving deconvolution methods in biology through open innovation competitions: an application to the connectivity map
A Blasco, T Natoli, MG Endres, RA Sergeev, S Randazzo, JH Paik, ...
Bioinformatics 37 (18), 2889-2895, 2021
12021
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