Xiao Yang
Xiao Yang
Affiliation inconnue
Adresse e-mail validée de broadinstitute.org
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Année
Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
SK Gire, A Goba, KG Andersen, RSG Sealfon, DJ Park, L Kanneh, ...
science 345 (6202), 1369-1372, 2014
11592014
A survey of error-correction methods for next-generation sequencing
X Yang, SP Chockalingam, S Aluru
Briefings in Bioinformatics 14 (1), 56-66, 2013
2772013
Reptile: representative tiling for short read error correction
X Yang, KS Dorman, S Aluru
Bioinformatics 26 (20), 2526, 2010
1732010
De novo assembly of highly diverse viral populations
X Yang, P Charlebois, S Gnerre, MG Coole, NJ Lennon, JZ Levin, J Qu, ...
BMC genomics 13 (1), 475, 2012
1642012
V-Phaser 2: variant inference for viral populations
X Yang, P Charlebois, A Macalalad, MR Henn, MC Zody
BMC genomics 14 (1), 674, 2013
972013
Long-Term Engraftment and Fetal Globin Induction upon BCL11A Gene Editing in Bone-Marrow-Derived CD34+ Hematopoietic Stem and Progenitor Cells
KH Chang, SE Smith, T Sullivan, K Chen, Q Zhou, JA West, M Liu, Y Liu, ...
Molecular Therapy-Methods & Clinical Development 4, 137-148, 2017
942017
ATHLATES: accurate typing of human leukocyte antigen through exome sequencing
C Liu, X Yang, B Duffy, T Mohanakumar, RD Mitra, MC Zody, JD Pfeifer
Nucleic acids research 41 (14), e142-e142, 2013
902013
Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification
CM Malboeuf, X Yang, P Charlebois, J Qu, AM Berlin, M Casali, KN Pesko, ...
Nucleic acids research 41 (1), e13-e13, 2013
782013
High-throughput DNA sequence data compression
Z Zhu, Y Zhang, Z Ji, S He, X Yang
Briefings in bioinformatics 16 (1), 1-15, 2015
722015
STAR-Fusion: fast and accurate fusion transcript detection from RNA-Seq
BJ Haas, A Dobin, N Stransky, B Li, X Yang, T Tickle, A Bankapur, ...
BioRxiv, 120295, 2017
612017
Parallel de novo assembly of large genomes from high-throughput short reads
BG Jackson, M Regennitter, X Yang, PS Schnable, S Aluru
2010 IEEE International Symposium on Parallel & Distributed Processing …, 2010
502010
PARALLEL-TCOFFEE: A parallel multiple sequence aligner.
J Zola, X Yang, A Rospondek, S Aluru
ISCA PDCS 7, 248-253, 2007
492007
Within-host whole-genome deep sequencing and diversity analysis of human respiratory syncytial virus infection reveals dynamics of genomic diversity in the absence and presence …
YH Grad, R Newman, M Zody, X Yang, R Murphy, J Qu, CM Malboeuf, ...
Journal of virology 88 (13), 7286-7293, 2014
442014
Discovery of novel rhabdoviruses in the blood of healthy individuals from West Africa
MH Stremlau, KG Andersen, OA Folarin, JN Grove, I Odia, PE Ehiane, ...
PLoS Negl Trop Dis 9 (3), e0003631, 2015
402015
Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA
MC Liu, GR Oxnard, EA Klein, C Swanton, MV Seiden, MC Liu, ...
Annals of Oncology, 2020
382020
Repeat-aware modeling and correction of short read errors
X Yang, S Aluru, K Dorman
BMC Bioinformatics 12 (Suppl 1), S52, 2011
372011
Parallel metagenomic sequence clustering via sketching and maximal quasi-clique enumeration on map-reduce clouds
X Yang, J Zola, S Aluru
2011 IEEE International Parallel & Distributed Processing Symposium, 1223-1233, 2011
342011
Fluid spatial dynamics of West Nile virus in the United States: Rapid spread in a permissive host environment
F Di Giallonardo, JL Geoghegan, DE Docherty, RG McLean, MC Zody, ...
Journal of virology 90 (2), 862-872, 2016
302016
Light-weight reference-based compression of FASTQ data
Y Zhang, L Li, Y Yang, X Yang, S He, Z Zhu
BMC bioinformatics 16 (1), 188, 2015
302015
Graphical approach to weak motif recognition
X Yang, JC Rajapakse
Genome Informatics 15 (2), 52-62, 2004
232004
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