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Benjamin Asher Barad
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EMRinger: side chain–directed model and map validation for 3D cryo-electron microscopy
BA Barad, N Echols, RYR Wang, Y Cheng, F DiMaio, PD Adams, ...
Nature methods 12 (10), 943-946, 2015
5802015
Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta
RYR Wang, Y Song, BA Barad, Y Cheng, JS Fraser, F DiMaio
Elife 5, e17219, 2016
2772016
Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting
D Mavor, K Barlow, S Thompson, BA Barad, AR Bonny, CL Cario, ...
Elife 5, 2016
662016
XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction
JL Thomaston, RA Woldeyes, T Nakane, A Yamashita, T Tanaka, ...
Proceedings of the National Academy of Sciences 114 (51), 13357-13362, 2017
562017
Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge
CL Lawson, A Kryshtafovych, PD Adams, PV Afonine, ML Baker, ...
Nature methods 18 (2), 156-164, 2021
44*2021
Temperature-jump solution X-ray scattering reveals distinct motions in a dynamic enzyme
MC Thompson, BA Barad, AM Wolff, H Sun Cho, F Schotte, D Schwarz, ...
Nature chemistry 11 (11), 1058-1066, 2019
362019
Differences in the chitinolytic activity of mammalian chitinases on soluble and insoluble substrates
BA Barad, L Liu, RE Diaz, R Basilio, SJ Van Dyken, RM Locksley, ...
Protein Science 29 (4), 952-963, 2020
122020
CellPAINT: Turnkey illustration of molecular cell biology
A Gardner, L Autin, D Fuentes, M Maritan, BA Barad, M Medina, AJ Olson, ...
Frontiers in bioinformatics 1, 660936, 2021
92021
Synthetic essentiality of metabolic regulator PDHK1 in PTEN-deficient cells and cancers
N Chatterjee, E Pazarentzos, MK Mayekar, P Gui, DV Allegakoen, ...
Cell reports 28 (9), 2317-2330. e8, 2019
92019
A surface morphometrics toolkit to quantify organellar membrane ultrastructure using cryo-electron tomography
BA Barad, M Medina, D Fuentes, RL Wiseman, DA Grotjahn
bioRxiv, 2022
42022
Nanoscale details of mitochondrial fission revealed by cryo-electron tomography
SK Mageswaran, DA Grotjahn, X Zeng, BA Barad, MA Medina, MH Hoang, ...
bioRxiv, 2021
22021
Mutant Chitinase With Enhanced Expression and Activity
B Barad, J Fraser, S Van Dyken, R Locksley
US Patent App. 17/505,561, 2022
2022
Mapping Protein Dynamics at High-Resolution with Temperature-Jump X-ray Crystallography
AM Wolff, E Nango, ID Young, AS Brewster, M Kubo, T Nomura, ...
bioRxiv, 2022
2022
Maximizing Interpretability from Complex Experiments in Structural Biology and Biochemistry
BA Barad
UCSF, 2019
2019
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Articles 1–14