Yasuo Tabei
Yasuo Tabei
Unit leader at RIKEN-AIP
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A fast structural multiple alignment method for long RNA sequences
Y Tabei, H Kiryu, T Kin, K Asai
BMC bioinformatics 9 (1), 1-17, 2008
Murlet: a practical multiple alignment tool for structural RNA sequences
H Kiryu, Y Tabei, T Kin, K Asai
Bioinformatics 23 (13), 1588-1598, 2007
Identification of chemogenomic features from drug–target interaction networks using interpretable classifiers
Y Tabei, E Pauwels, V Stoven, K Takemoto, Y Yamanishi
Bioinformatics 28 (18), i487-i494, 2012
SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments
Y Tabei, K Tsuda, T Kin, K Asai
Bioinformatics 22 (14), 1723-1729, 2006
Bayesian dynamic mode decomposition.
N Takeishi, Y Kawahara, Y Tabei, T Yairi
IJCAI, 2814-2821, 2017
PoSSuM: a database of similar protein–ligand binding and putative pockets
JI Ito, Y Tabei, K Shimizu, K Tsuda, K Tomii
Nucleic acids research 40 (D1), D541-D548, 2012
Queries on LZ-bounded encodings
D Belazzougui, T Gagie, P Gawrychowski, J Kärkkäinen, A Ordónez, ...
2015 Data Compression Conference, 83-92, 2015
Scalable prediction of compound-protein interactions using minwise hashing
Y Tabei, Y Yamanishi
BMC systems biology 7 (6), 1-13, 2013
Improved ESP-index: a practical self-index for highly repetitive texts
Y Takabatake, Y Tabei, H Sakamoto
International Symposium on Experimental Algorithms, 2014
Fully-online grammar compression
S Maruyama, Y Tabei, H Sakamoto, K Sadakane
International Symposium on String Processing and Information Retrieval, 218-229, 2013
Predicting inhibitory and activatory drug targets by chemically and genetically perturbed transcriptome signatures
R Sawada, M Iwata, Y Tabei, H Yamato, Y Yamanishi
Scientific reports 8 (1), 1-9, 2018
Access, rank, and select in grammar-compressed strings
D Belazzougui, PH Cording, SJ Puglisi, Y Tabei
Algorithms-ESA 2015, 142-154, 2015
Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets
M Kotera, Y Tabei, Y Yamanishi, T Tokimatsu, S Goto
Bioinformatics 29 (13), i135-i144, 2013
PDB‐scale analysis of known and putative ligand‐binding sites with structural sketches
JI Ito, Y Tabei, K Shimizu, K Tomii, K Tsuda
Proteins: Structure, Function, and Bioinformatics 80 (3), 747-763, 2012
KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics
M Kotera, Y Tabei, Y Yamanishi, Y Moriya, T Tokimatsu, M Kanehisa, ...
BMC systems biology 7 (6), 1-17, 2013
Inferring protein domains associated with drug side effects based on drug-target interaction network
H Iwata, S Mizutani, Y Tabei, M Kotera, S Goto, Y Yamanishi
BMC systems biology 7 (6), 1-11, 2013
Scalable partial least squares regression on grammar-compressed data matrices
Y Tabei, H Saigo, Y Yamanishi, S J. Puglisi
Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge …, 2016
Scalable Partial Least Squares Regression on Grammar-Compressed Data Matrices
Y Tabei, H Saigo, Y Yamanishi, SJ Puglisi
Fully online grammar compression in constant space
S Maruyama, Y Tabei
2014 Data Compression Conference, 173-182, 2014
A succinct grammar compression
Y Tabei, Y Takabatake, H Sakamoto
Annual Symposium on Combinatorial Pattern Matching, 235-246, 2013
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