| Antimicrobial resistance in Mycobacterium tuberculosis: mechanistic and evolutionary perspectives SM Gygli, S Borrell, A Trauner, S Gagneux FEMS Microbiology Reviews 41 (3), 354-373, 2017 | 107 | 2017 |
| Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity F Menardo, C Loiseau, D Brites, M Coscolla, SM Gygli, LK Rutaihwa, ... BMC bioinformatics 19 (1), 1-8, 2018 | 25 | 2018 |
| Whole-genome sequencing for drug resistance profile prediction in Mycobacterium tuberculosis SM Gygli, PM Keller, M Ballif, N Blöchliger, R Hömke, M Reinhard, ... Antimicrobial agents and chemotherapy 63 (4), 2019 | 24 | 2019 |
| Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis JL Payne, F Menardo, A Trauner, S Borrell, SM Gygli, C Loiseau, ... PLoS biology 17 (5), e3000265, 2019 | 17 | 2019 |
| Population Genomics of Francisella tularensis subsp. holarctica and its Implication on the Eco-Epidemiology of Tularemia in Switzerland M Wittwer, E Altpeter, P Pilo, SM Gygli, C Beuret, F Foucault, ... Frontiers in Cellular and Infection Microbiology 8, 89, 2018 | 17 | 2018 |
| Multiple introductions of Mycobacterium tuberculosis lineage 2–Beijing into Africa over centuries LK Rutaihwa, F Menardo, D Stucki, SM Gygli, SD Ley, B Malla, ... Frontiers in ecology and evolution 7, 112, 2019 | 11 | 2019 |
| Resource misallocation as a mediator of fitness costs in antibiotic resistance. A Trauner, A Banaei-Esfahani, SM Gygli, P Warmer, J Feldmann, ... bioRxiv, 456434, 2018 | 1 | 2018 |
| Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim F Menardo, LK Rutaihwa, M Zwyer, S Borrell, I Comas, EC Conceicao, ... bioRxiv, 2020 | | 2020 |
| Network analysis identifies regulators of lineage-specific phenotypes in Mycobacterium tuberculosis A Banaei-Esfahani, A Trauner, SB Farnov, SM Gygli, TR Rustad, ... bioRxiv, 2020 | | 2020 |
Sebastien GagneuxSwiss Tropical and Public Health InstituteVerified email at swisstph.ch
