| Next generation sequencing of microbial cell-free DNA for rapid noninvasive diagnosis of infectious diseases in immunocompromised hosts JF Camargo, A Ahmed, MI Morris, S Anjan, CE Prado, OV Martinez, ... Biology of Blood and Marrow Transplantation 25 (3), S356-S357, 2019 | 67 | 2019 |
| Liquid biopsy for invasive mold infections in hematopoietic cell transplant recipients with pneumonia through next-generation sequencing of microbial cell-free DNA in plasma JA Hill, SC Dalai, DK Hong, AA Ahmed, C Ho, D Hollemon, L Blair, ... Clinical Infectious Diseases 73 (11), e3876-e3883, 2021 | 63 | 2021 |
| Evolution and molecular epidemiology of subtype C HIV-1 in Zimbabwe SC Dalai, T de Oliveira, GW Harkins, SG Kassaye, J Lint, J Manasa, ... Aids 23 (18), 2523-2532, 2009 | 61 | 2009 |
| Detection of HIV-1 in saliva: implications for case-identification, clinical monitoring and surveillance for drug resistance M Balamane, MA Winters, SC Dalai, AH Freeman, MW Traves, ... The open virology journal 4, 88, 2010 | 47 | 2010 |
| Environmental enrichment reduces neuronal intranuclear inclusion load but has no effect on messenger RNA expression in a mouse model of Huntington disease CL Benn, R Luthi-Carter, A Kuhn, G Sadri-Vakili, KL Blankson, SC Dalai, ... Journal of Neuropathology & Experimental Neurology 69 (8), 817-827, 2010 | 39 | 2010 |
| Clinical validation of a novel T-cell receptor sequencing assay for identification of recent or prior severe acute respiratory syndrome coronavirus 2 infection SC Dalai, JN Dines, TM Snyder, RM Gittelman, T Eerkes, P Vaney, ... Clinical Infectious Diseases 75 (12), 2079-2087, 2022 | 37 | 2022 |
| T cell receptor sequencing identifies prior SARS-CoV-2 infection and correlates with neutralizing antibodies and disease severity R Elyanow, TM Snyder, SC Dalai, RM Gittelman, J Boonyaratanakornkit, ... JCI insight 7 (10), 2022 | 31 | 2022 |
| Microbial cell-free DNA identifies the causative pathogen in infective endocarditis and remains detectable longer than conventional blood culture in patients with prior … EM Eichenberger, N Degner, ER Scott, F Ruffin, J Franzone, ... Clinical Infectious Diseases 76 (3), e1492-e1500, 2023 | 30 | 2023 |
| Diagnosis and Genotyping of Coxiella burnetii Endocarditis in a Patient with Prosthetic Pulmonary Valve Replacement Using Next-Generation Sequencing of … M Kondo, SC Dalai, S Venkatasubrahmanyam, N Eisenberg, ... Open forum infectious diseases 6 (6), ofz242, 2019 | 27 | 2019 |
| Placental malaria and mother-to-child transmission of human immunodeficiency virus-1 in rural Rwanda PL Bulterys, A Chao, SC Dalai, MC Zink, A Dushimimana, D Katzenstein, ... The American journal of tropical medicine and hygiene 85 (2), 202, 2011 | 26 | 2011 |
| Immunosequencing and epitope mapping reveal substantial preservation of the T cell immune response to Omicron generated by SARS-CoV-2 vaccines DH May, BER Rubin, SC Dalai, K Patel, S Shafiani, R Elyanow, ... MedRxiv, 2021.12. 20.21267877, 2021 | 23 | 2021 |
| Diagnosis and tracking of SARS-CoV-2 infection by T-cell receptor sequencing RM Gittelman, E Lavezzo, TM Snyder, HJ Zahid, R Elyanow, S Dalai, ... MedRxiv, 2020.11. 09.20228023, 2020 | 20 | 2020 |
| Longitudinal analysis of T cell receptor repertoires reveals shared patterns of antigen-specific response to SARS-CoV-2 infection RM Gittelman, E Lavezzo, TM Snyder, HJ Zahid, CL Carty, R Elyanow, ... JCI insight 7 (10), 2022 | 16 | 2022 |
| Circulating microbial cell-free DNA is associated with inflammatory host-responses in severe pneumonia H Yang, G Haidar, NS Al-Yousif, H Zia, D Kotok, AA Ahmed, L Blair, ... Thorax 76 (12), 1231-1235, 2021 | 13 | 2021 |
| T-cell receptor sequencing identifies prior SARS-CoV-2 infection and correlates with neutralizing antibody titers and disease severity R Elyanow, TM Snyder, SC Dalai, RM Gittelman, J Boonyaratanakornkit, ... medRxiv, 2021 | 13 | 2021 |
| Diagnosis and Tracking of Past SARS-CoV-2 Infection in a Large Study of Vo', Italy Through T-Cell Receptor Sequencing (preprint) RM Gittelman, E Lavezzo, TM Snyder, HJ Zahid, R Elyanow, S Dalai, ... | 12 | 2020 |
| Utility of whole-genome next-generation sequencing of plasma in identifying opportunistic infections in HIV/AIDS Y Zhou, V Hemmige, SC Dalai, DK Hong, K Muldrew, MA Mohajer The Open AIDS Journal 13 (1), 2019 | 12 | 2019 |
| Viral sequence analysis from HIV-infected mothers and infants: molecular evolution, diversity, and risk factors for mother-to-child transmission PL Bulterys, SC Dalai, DA Katzenstein Clinics in perinatology 37 (4), 739-750, 2010 | 12 | 2010 |
| Immunosequencing of the T-cell receptor repertoire reveals signatures specific for diagnosis and characterization of early Lyme disease J Greissl, M Pesesky, SC Dalai, AW Rebman, MJ Soloski, EJ Horn, ... medRxiv, 2021.07. 30.21261353, 2021 | 8 | 2021 |
| Combining phylogenetic and network approaches to identify HIV-1 transmission links in San Mateo County, California SC Dalai, DM Junqueira, E Wilkinson, R Mehra, SL Kosakovsky Pond, ... Frontiers in microbiology 9, 2799, 2018 | 8 | 2018 |
