Alexandros Stamatakis

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Oleksiy M. KozlovHeidelberg Institute for Theoretical StudiesAdresse e-mail validée de h-its.org
Simon A BergerHeidelberg Institute for Theoretical Studies (HITS gGmbH)Adresse e-mail validée de h-its.org
Kassian KobertUni BielefeldAdresse e-mail validée de uni-bielefeld.de
Thomas LudwigProfessor Computer ScienceAdresse e-mail validée de org.dkrz.de
Lucas CzechCarnegie Institution for Science at Stanford UniversityAdresse e-mail validée de carnegiescience.edu
Diego DarribaUniversity of A Coruña, CITIC, Computer Architecture GroupAdresse e-mail validée de udc.es
Andre J. AbererAdresse e-mail validée de aberer.io
Nikolaos AlachiotisUniversity of TwenteAdresse e-mail validée de utwente.nl
Pavlos PavlidisFoundation of Research and Technology - Hellas (ICS)Adresse e-mail validée de ics.forth.gr
Jiajie ZhangGSKAdresse e-mail validée de gsk.com
Fernando Izquierdo-CarrascoAmazon Web ServicesAdresse e-mail validée de amazon.com
Pierre BarberaFreelance Bioinformatics Technology EngineerAdresse e-mail validée de h-its.org
Paschalia KapliPostdoc, Genetics, Evolution and Environment, University College LondonAdresse e-mail validée de ucl.ac.uk
Olaf R.P. Bininda-EmondsProfessor of Molecular Systematics, University of OldenburgAdresse e-mail validée de uni-oldenburg.de
Nicholas D. PattengaleAdresse e-mail validée de cs.unm.edu
Micah DunthornNatural History Museum, University of OsloAdresse e-mail validée de nhm.uio.no
Stephen A. SmithProfessor, University of MichiganAdresse e-mail validée de umich.edu
Frédéric MahéCIRAD, UMR PHIM, F-34398, Montpellier, FranceAdresse e-mail validée de cirad.fr
Bernard M.E. MoretISCB Fellow, Professor emeritus, Computer & Communication Sciences, EPFLAdresse e-mail validée de epfl.ch
Denis KrompassSiemens AGAdresse e-mail validée de siemens.com

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Alexandros Stamatakis

Foundation for Research and Technology - Hellas, HITS gGmbH, KIT

Adresse e-mail validée de ics.forth.gr - Page d'accueil

Algorithms Parallel Computing Bioinformatics Phylogenetics Evolutionary Biology


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies A Stamatakis Bioinformatics 30 (9), 1312-1313, 2014	28173	2014
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models A Stamatakis Bioinformatics 22 (21), 2688-2690, 2006	17008	2006
A rapid bootstrap algorithm for the RAxML web servers A Stamatakis, P Hoover, J Rougemont Systematic biology 57 (5), 758-771, 2008	7727	2008
ARB: a software environment for sequence data W Ludwig, O Strunk, R Westram, L Richter, H Meier, Yadhukumar, ... Nucleic acids research 32 (4), 1363-1371, 2004	6636	2004
PEAR: a fast and accurate Illumina Paired-End reAd mergeR J Zhang, K Kobert, T Flouri, A Stamatakis Bioinformatics 30 (5), 614-620, 2014	3805	2014
Phylogenomics resolves the timing and pattern of insect evolution B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ... Science 346 (6210), 763-767, 2014	2391	2014
A general species delimitation method with applications to phylogenetic placements J Zhang, P Kapli, P Pavlidis, A Stamatakis Bioinformatics 29 (22), 2869-2876, 2013	2365	2013
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference AM Kozlov, D Darriba, T Flouri, B Morel, A Stamatakis Bioinformatics 35 (21), 4453-4455, 2019	2241	2019
Whole-genome analyses resolve early branches in the tree of life of modern birds ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ... Science 346 (6215), 1320-1331, 2014	1837	2014
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees A Stamatakis, T Ludwig, H Meier Bioinformatics 21 (4), 456-463, 2005	1668	2005
ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models D Darriba, D Posada, AM Kozlov, A Stamatakis, B Morel, T Flouri Molecular biology and evolution 37 (1), 291-294, 2020	1066	2020
Eleven grand challenges in single-cell data science D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ... Genome biology 21 (1), 1-35, 2020	855	2020
Assessing the root of bilaterian animals with scalable phylogenomic methods A Hejnol, M Obst, A Stamatakis, M Ott, GW Rouse, GD Edgecombe, ... Proceedings of the Royal Society B: Biological Sciences 276 (1677), 4261-4270, 2009	825	2009
How many bootstrap replicates are necessary? ND Pattengale, M Alipour, ORP Bininda-Emonds, BME Moret, ... Journal of Computational Biology 17 (3), 337-354, 2010	803	2010
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo P Kapli, S Lutteropp, J Zhang, K Kobert, P Pavlidis, A Stamatakis, T Flouri Bioinformatics 33 (11), 1630-1638, 2017	709	2017
Selecting optimal partitioning schemes for phylogenomic datasets R Lanfear, B Calcott, D Kainer, C Mayer, A Stamatakis BMC Evolutionary Biology 14 (1), 82, 2014	663	2014
Frontiers: The iPlant Collaborative: Cyberinfrastructure for Plant Biology SA Goff, M Vaughn, S McKay, E Lyons, AE Stapleton, D Gessler, ... Frontiers in Plant Genetics And Genomics 2, 2011	525*	2011
Performance, accuracy, and web server for evolutionary placement of short sequence reads under maximum likelihood SA Berger, D Krompass, A Stamatakis Systematic biology 60 (3), 291, 2011	503	2011
Metagenomic species profiling using universal phylogenetic marker genes S Sunagawa, DR Mende, G Zeller, F Izquierdo-Carrasco, SA Berger, ... Nature methods 10 (12), 1196-1199, 2013	488	2013
Phylogenetic models of rate heterogeneity: a high performance computing perspective A Stamatakis Proceedings 20th IEEE International Parallel & Distributed Processing …, 2006	428	2006

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