| A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut … M Leray, JY Yang, CP Meyer, SC Mills, N Agudelo, V Ranwez, JT Boehm, ... Frontiers in zoology 10 (1), 1-14, 2013 | 636 | 2013 |
| MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons V Ranwez, S Harispe, F Delsuc, EJP Douzery PloS one 6 (9), e22594, 2011 | 383 | 2011 |
| Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes J Romiguier, V Ranwez, EJP Douzery, N Galtier Genome research 20 (8), 1001-1009, 2010 | 197 | 2010 |
| Multiple molecular evidences for a living mammalian fossil D Huchon, P Chevret, U Jordan, CW Kilpatrick, V Ranwez, PD Jenkins, ... Proceedings of the National Academy of Sciences 104 (18), 7495-7499, 2007 | 167 | 2007 |
| GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates N Galtier, L Duret, S Glémin, V Ranwez Trends in Genetics 25 (1), 1-5, 2009 | 163 | 2009 |
| Models, algorithms and programs for phylogeny reconciliation JP Doyon, V Ranwez, V Daubin, V Berry Briefings in bioinformatics 12 (5), 392-400, 2011 | 159 | 2011 |
| Reference‐free transcriptome assembly in non‐model animals from next‐generation sequencing data V Cahais, P Gayral, G Tsagkogeorga, J Melo‐Ferreira, M Ballenghien, ... Molecular ecology resources 12 (5), 834-845, 2012 | 158 | 2012 |
| An efficient algorithm for gene/species trees parsimonious reconciliation with losses, duplications and transfers JP Doyon, C Scornavacca, KY Gorbunov, GJ Szöllősi, V Ranwez, V Berry RECOMB international workshop on comparative genomics, 93-108, 2010 | 158 | 2010 |
| Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals J Romiguier, V Ranwez, F Delsuc, N Galtier, EJP Douzery Molecular biology and evolution 30 (9), 2134-2144, 2013 | 142 | 2013 |
| Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti E Cornillot, K Hadj-Kaddour, A Dassouli, B Noel, V Ranwez, B Vacherie, ... Nucleic acids research 40 (18), 9102-9114, 2012 | 133 | 2012 |
| OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics V Ranwez, F Delsuc, S Ranwez, K Belkhir, MK Tilak, EJP Douzery BMC evolutionary biology 7 (1), 1-12, 2007 | 127 | 2007 |
| Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics J Dutheil, S Gaillard, E Bazin, S Glémin, V Ranwez, N Galtier, K Belkhir BMC bioinformatics 7 (1), 1-6, 2006 | 125 | 2006 |
| Quartet-based phylogenetic inference: improvements and limits V Ranwez, O Gascuel Molecular biology and evolution 18 (6), 1103-1116, 2001 | 119 | 2001 |
| Pitfalls in supermatrix phylogenomics H Philippe, DM de Vienne, V Ranwez, B Roure, D Baurain, F Delsuc European Journal of Taxonomy, 2017 | 75 | 2017 |
| MACSE v2: toolkit for the alignment of coding sequences accounting for frameshifts and stop codons V Ranwez, EJP Douzery, C Cambon, N Chantret, F Delsuc Molecular biology and evolution 35 (10), 2582-2584, 2018 | 73 | 2018 |
| OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals EJP Douzery, C Scornavacca, J Romiguier, K Belkhir, N Galtier, F Delsuc, ... Molecular biology and evolution 31 (7), 1923-1928, 2014 | 70 | 2014 |
| User centered and ontology based information retrieval system for life sciences MF Sy, S Ranwez, J Montmain, A Regnault, M Crampes, V Ranwez BMC bioinformatics 13 (1), 1-12, 2012 | 70 | 2012 |
| Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae) JS Escobar, C Scornavacca, A Cenci, C Guilhaumon, S Santoni, ... BMC evolutionary biology 11 (1), 1-18, 2011 | 70 | 2011 |
| Order independent homotopic thinning for binary and grey tone anchored skeletons V Ranwez, P Soille Pattern Recognition Letters 23 (6), 687-702, 2002 | 63 | 2002 |
| SuperTriplets: a triplet-based supertree approach to phylogenomics V Ranwez, A Criscuolo, EJP Douzery Bioinformatics 26 (12), i115-i123, 2010 | 62 | 2010 |
