Marko Budinich
Marko Budinich
Roscoff Marine Station
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A new genome of Acidithiobacillus thiooxidans provides insights into adaptation to a bioleaching environment
D Travisany, MP Cortés, M Latorre, A Di Genova, M Budinich, ...
Research in microbiology 165 (9), 743-752, 2014
The bioleaching potential of a bacterial consortium
M Latorre, MP Cortés, D Travisany, A Di Genova, M Budinich, ...
Bioresource technology 218, 659-666, 2016
Stoichiometric modeling of oxidation of reduced inorganic sulfur compounds (Riscs) in Acidithiobacillus thiooxidans
RA Bobadilla Fazzini, MP Cortés, L Padilla, D Maturana, M Budinich, ...
Biotechnology and bioengineering 110 (8), 2242-2251, 2013
Metabolomic study of Chilean biomining bacteria Acidithiobacillus ferrooxidans strain Wenelen and Acidithiobacillus thiooxidans strain Licanantay
P Martínez, S Gálvez, N Ohtsuka, M Budinich, MP Cortés, C Serpell, ...
Metabolomics 9 (1), 247-257, 2013
A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems
M Budinich, J Bourdon, A Larhlimi, D Eveillard
PloS one 12 (2), e0171744, 2017
Enterococcus faecalis reconfigures its transcriptional regulatory network activation at different copper levels
M Latorre, J Galloway-Peña, JH Roh, M Budinich, A Reyes-Jara, ...
Metallomics 6 (3), 572-581, 2014
Toward systems biology in brown algae to explore acclimation and adaptation to the shore environment
T Tonon, D Eveillard, S Prigent, J Bourdon, P Potin, C Boyen, A Siegel
Omics: a journal of integrative biology 15 (12), 883-892, 2011
Global transcriptional responses of Acidithiobacillus ferrooxidans Wenelen under different sulfide minerals
M Latorre, N Ehrenfeld, MP Cortés, D Travisany, M Budinich, A Aravena, ...
Bioresource technology 200, 29-34, 2016
Enterococcus faecalis reconfigures its gene regulatory network activation under copper exposure
M Latorre, J Galloway-Peña, JH Roh, M Budinich, A Reyes-Jara, ...
Metallomics: integrated biometal science 6 (3), 572, 2014
OPINION PAPER Evolutionary Constraint-Based Formulation Requires New Bi-level Solving Techniques
M Budinich, J Bourdon, A Larhlimi, D Eveillard
International Conference on Computational Methods in Systems Biology, 279-281, 2015
Relations in microbial ecosystems: application in a hot spring community
M Budinich, A Larhlimi, J Bourdon, D Eveillard
F1000Research 6, 2015
Impact of the species compartment definition on quantitative modeling of microbial communities
M Budinich, J Bourdon, D Eveillard
bioRxiv, 018010, 2015
MeDUSA: a sage-based tool for computing the stoichiometric capacitance of a metabolic network
M Budinich, D Eveillard, J Bourdon, A Larhlimi
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