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Han-Yu Chuang
Han-Yu Chuang
Vice President, Technology, Guardant Health
Verified email at guardanthealth.com
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Year
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ...
Nucleic acids research 33 (17), 5691-5702, 2005
22662005
Network‐based classification of breast cancer metastasis
HY Chuang, E Lee, YT Liu, D Lee, T Ideker
Molecular systems biology 3 (1), 140, 2007
17832007
Inferring pathway activity toward precise disease classification
E Lee, HY Chuang, JW Kim, T Ideker, D Lee
PLoS computational biology 4 (11), e1000217, 2008
6172008
A decade of systems biology
HY Chuang, M Hofree, T Ideker
Annual review of cell and developmental biology 26, 721-744, 2010
4172010
A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree
MA Eberle, E Fritzilas, P Krusche, M Källberg, BL Moore, MA Bekritsky, ...
Genome research 27 (1), 157-164, 2017
3882017
Isaac: Ultra-fast whole genome secondary analysis on Illumina sequencing platforms
C Raczy, R Petrovski, CT Saunders, I Chorny, S Kruglyak, EH Margulies, ...
Bioinformatics 29 (16), 2041-2043, 2013
3492013
ROR1 is expressed in human breast cancer and associated with enhanced tumor-cell growth
S Zhang, L Chen, B Cui, HY Chuang, J Yu, J Wang-Rodriguez, L Tang, ...
PloS one 7 (3), e31127, 2012
2822012
Whole genome haplotyping by dilution, amplification and sequencing
F Kaper, S Swamy, B Klotzle, S Muchel, J Cottrell, M Bibikova, ...
Proceedings of the National Academy of Sciences 110 (14), 5552-5557, 2013
1062013
Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species
KY Lee, HY Chuang, A Beyer, MK Sung, WK Huh, B Lee, T Ideker
Nucleic acids research 36 (20), e136-e136, 2008
1052008
B-cell activating factor and v-Myc myelocytomatosis viral oncogene homolog (c-Myc) influence progression of chronic lymphocytic leukemia
W Zhang, AP Kater, GF Widhopf, HY Chuang, T Enzler, DF James, ...
Proceedings of the National Academy of Sciences 107 (44), 18956-18960, 2010
902010
Subnetwork-based analysis of chronic lymphocytic leukemia identifies pathways that associate with disease progression
HY Chuang, L Rassenti, M Salcedo, K Licon, A Kohlmann, T Haferlach, ...
Blood, The Journal of the American Society of Hematology 120 (13), 2639-2649, 2012
892012
Chronic lymphocytic leukemia of Eμ-TCL1 transgenic mice undergoes rapid cell turnover that can be offset by extrinsic CD257 to accelerate disease progression
T Enzler, AP Kater, W Zhang, GF Widhopf, HY Chuang, J Lee, E Avery, ...
Blood, The Journal of the American Society of Hematology 114 (20), 4469-4476, 2009
692009
Pisces: an accurate and versatile variant caller for somatic and germline next-generation sequencing data
T Dunn, G Berry, D Emig-Agius, Y Jiang, S Lei, A Iyer, N Udar, ...
Bioinformatics 35 (9), 1579-1581, 2019
632019
Proteome-wide discovery of mislocated proteins in cancer
KY Lee, K Byun, W Hong, HY Chuang, CG Pack, E Bayarsaikhan, ...
Genome research 23 (8), 1283-1294, 2013
592013
Development and validation of an ultradeep next-generation sequencing assay for testing of plasma cell-free DNA from patients with advanced cancer
F Janku, S Zhang, J Waters, L Liu, HJ Huang, V Subbiah, DS Hong, ...
Clinical Cancer Research 23 (18), 5648-5656, 2017
502017
Identifying significant genes from microarray data
HY Chuang, H Liu, S Brown, C McMunn-Coffran, CY Kao, DF Hsu
Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering, 358-365, 2004
362004
Biomarkers for Diagnosis and Treatment of Chronic Lymphocytic Leukemia
TJ Kipps, Z Shen, SP Briggs, T Ideker, L Rassenti, HY Chuang
US Patent App. 13/058,530, 2011
342011
Open-access Synthetic Spike-in mRNA-seq data for Cancer Gene Fusions
WD Tembe, SJ Pond, C Legendre, HY Chuang, WS Liang, NE Kim, ...
BMC Genomics 2014 (15), 824, 2014
262014
Ranking genes for discriminability on microarray data
HY Chuang, HK Tsai, YF Tsai, CY Kao
Journal of Information Science and Engineering 19 (6), 953-966, 2003
26*2003
Methods and systems for generation and error-correction of unique molecular index sets with heterogeneous molecular lengths
K Wu, C Zhao, HY Chuang, A So, S Tanner, SM Gross
US Patent 10,844,429, 2020
222020
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Articles 1–20