Julien Lagarde

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Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraAdresse e-mail validée de crg.cat
Jennifer HarrowELIXIRAdresse e-mail validée de elixir-europe.org
Thomas GingerasProfessor of Functional Genomics, Cold Spring Harbor LaboratoryAdresse e-mail validée de cshl.edu
Adam FrankishSenior Staff Scientist, Wellcome Trust Sanger InstituteAdresse e-mail validée de sanger.ac.uk
Stylianos E. AntonarakisProfessor of Genetic Medicine, University of Geneva Medical SchoolAdresse e-mail validée de unige.ch
Tim HubbardHead Dept. Medical & Molecular Genetics, King's College London, Director of Bioinformatics, King'sAdresse e-mail validée de kcl.ac.uk
Mark GersteinProfessor of Biomedical Informatics, Yale UniversityAdresse e-mail validée de yale.edu
Ewan BirneyDirector, EMBL-EBIAdresse e-mail validée de ebi.ac.uk
Philipp Kapranov, PhDHuaqiao UniversityAdresse e-mail validée de hqu.edu.cn
Paul FlicekEMBL, European Bioinformatics Institute, Wellcome Sanger InstituteAdresse e-mail validée de ebi.ac.uk
Eduardo EyrasEMBL Australia Group Leader, Professor - Australian National UniversityAdresse e-mail validée de anu.edu.au
David SwarbreckGroup Leader, Earlham InstituteAdresse e-mail validée de earlham.ac.uk
Peter F StadlerProfessor of Bioinformatics, Univ. LeipzigAdresse e-mail validée de bioinf.uni-leipzig.de
Robert CasteloAssociate Professor, Universitat Pompeu Fabra, COSTNET CA15109Adresse e-mail validée de upf.edu
Sarah DjebaliIRSD, INSERM, ToulouseAdresse e-mail validée de inserm.fr

Julien Lagarde

Centre for Genomic Regulation

Adresse e-mail validée de crg.es

Bioinformatics Computational Biology Genomics Molecular Biology


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
An integrated encyclopedia of DNA elements in the human genome. EP Consortium Nature 489 (7414), 57-74, 2012	11825	2012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project E Birney, JA Stamatoyannopoulos, A Dutta, R Guigó, TR Gingeras, ... Nature 447 (7146), 799-816, 2007	5309	2007
Landscape of transcription in human cells S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ... Nature 489 (7414), 101-108, 2012	4036	2012
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ... Genome Research 22 (9), 1775-1789, 2012	3844	2012
A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014	1333	2014
A user’s guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS Biol 9 (4), e1001046, 2011	1224	2011
GENCODE reference annotation for the human and mouse genomes A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ... Nucleic acids research 47 (D1), D766-D773, 2019	830	2019
GENCODE: producing a reference annotation for ENCODE J Harrow, F Denoeud, A Frankish, A Reymond, CK Chen, J Chrast, ... Genome biology 7 (1), S4, 2006	623	2006
Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, M Akerman, T Alioto, ... Nature methods 10 (12), 1177, 2013	546	2013
EGASP: the human ENCODE genome annotation assessment project R Guigó, P Flicek, JF Abril, A Reymond, J Lagarde, F Denoeud, ... Genome biology 7 (1), S2, 2006	309	2006
An encyclopedia of mouse DNA elements (Mouse ENCODE) JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ... Genome biology 13 (8), 418, 2012	304	2012
Comparative analysis of the transcriptome across distant species MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ... Nature 512 (7515), 445-448, 2014	260	2014
The implications of alternative splicing in the ENCODE protein complement ML Tress, PL Martelli, A Frankish, GA Reeves, JJ Wesselink, C Yeats, ... Proceedings of the National Academy of Sciences 104 (13), 5495-5500, 2007	230	2007
Towards a complete map of the human long non-coding RNA transcriptome B Uszczynska-Ratajczak, J Lagarde, A Frankish, R Guigó, R Johnson Nature Reviews Genetics 19 (9), 535-548, 2018	215	2018
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions F Denoeud, P Kapranov, C Ucla, A Frankish, R Castelo, J Drenkow, ... Genome research 17 (6), 746-759, 2007	206	2007
Structured RNAs in the ENCODE selected regions of the human genome S Washietl, JS Pedersen, JO Korbel, C Stocsits, AR Gruber, ... Genome research 17 (6), 852-864, 2007	201	2007
An encyclopedia of mouse DNA elements (Mouse ENCODE) EC Mouse, JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, ... Genome Biol 13 (8), 418, 2012	135	2012
High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing J Lagarde, B Uszczynska-Ratajczak, S Carbonell, S Pérez-Lluch, A Abad, ... Nature genetics 49 (12), 1731-1740, 2017	129	2017
Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression DD Pervouchine, S Djebali, A Breschi, CA Davis, PP Barja, A Dobin, ... Nature communications 6 (1), 1-11, 2015	63	2015
Evidence for transcript networks composed of chimeric RNAs in human cells S Djebali, J Lagarde, P Kapranov, V Lacroix, C Borel, JM Mudge, ... PLoS One 7 (1), e28213, 2012	56	2012

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