PPM–A highly efficient parallel particle–mesh library for the simulation of continuum systems IF Sbalzarini, JH Walther, M Bergdorf, SE Hieber, EM Kotsalis, ... Journal of Computational Physics 215 (2), 566-588, 2006 | 234 | 2006 |

Billion vortex particle direct numerical simulations of aircraft wakes P Chatelain, A Curioni, M Bergdorf, D Rossinelli, W Andreoni, ... Computer Methods in Applied Mechanics and Engineering 197 (13-16), 1296-1304, 2008 | 191 | 2008 |

A hybrid model for three-dimensional simulations of sprouting angiogenesis F Milde, M Bergdorf, P Koumoutsakos Biophysical journal 95 (7), 3146-3160, 2008 | 170 | 2008 |

Anton 3: twenty microseconds of molecular dynamics simulation before lunch DE Shaw, PJ Adams, A Azaria, JA Bank, B Batson, A Bell, M Bergdorf, ... Proceedings of the International Conference for High Performance Computing …, 2021 | 159 | 2021 |

GPU accelerated simulations of bluff body flows using vortex particle methods D Rossinelli, M Bergdorf, GH Cottet, P Koumoutsakos Journal of Computational Physics 229 (9), 3316-3333, 2010 | 154 | 2010 |

Multilevel adaptive particle methods for convection-diffusion equations M Bergdorf, GH Cottet, P Koumoutsakos Multiscale Modeling & Simulation 4 (1), 328-357, 2005 | 103 | 2005 |

A Lagrangian particle-wavelet method M Bergdorf, P Koumoutsakos Multiscale Modeling & Simulation 5 (3), 980-995, 2006 | 102 | 2006 |

Influence of cut-off truncation and artificial periodicity of electrostatic interactions in molecular simulations of solvated ions: A continuum electrostatics study M Bergdorf, C Peter, PH Hünenberger The Journal of chemical physics 119 (17), 9129-9144, 2003 | 93 | 2003 |

High order finite volume methods on wavelet-adapted grids with local time-stepping on multicore architectures for the simulation of shock-bubble interactions B Hejazialhosseini, D Rossinelli, M Bergdorf, P Koumoutsakos Journal of Computational Physics 229 (22), 8364-8383, 2010 | 70 | 2010 |

Quantum chemical benchmark databases of gold-standard dimer interaction energies AG Donchev, AG Taube, E Decolvenaere, C Hargus, RT McGibbon, ... Scientific data 8 (1), 55, 2021 | 68 | 2021 |

*MRAG-I2D*: Multi-resolution adapted grids for remeshed vortex methods on multicore architecturesD Rossinelli, B Hejazialhosseini, W van Rees, M Gazzola, M Bergdorf, ... Journal of Computational Physics 288, 1-18, 2015 | 68 | 2015 |

A numerical study of the stabilitiy of helical vortices using vortex methods JH Walther, M Guenot, E Machefaux, JT Rasmussen, P Chatelain, ... Journal of Physics: Conference Series 75 (1), 012034, 2007 | 66 | 2007 |

Direct numerical simulations of vortex rings at ReΓ= 7500 M Bergdorf, P Koumoutsakos, A Leonard Journal of Fluid Mechanics 581, 495-505, 2007 | 64 | 2007 |

A Lagrangian particle method for reaction–diffusion systems on deforming surfaces M Bergdorf, IF Sbalzarini, P Koumoutsakos Journal of mathematical biology 61, 649-663, 2010 | 55 | 2010 |

Water–carbon interactions III: the influence of surface and fluid impurities JH Walther, T Werder, RL Jaffe, P Gonnet, M Bergdorf, U Zimmerli, ... Physical Chemistry Chemical Physics 6 (8), 1988-1995, 2004 | 40 | 2004 |

Desmond/GPU Performance as of November 2014 M Bergdorf, ET Kim, CA Rendleman, DE Shaw DE Shaw Research Technical Report DESRES/TR—2014-01, 2014 | 25 | 2014 |

A software framework for the portable parallelization of particle-mesh simulations IF Sbalzarini, JH Walther, B Polasek, P Chatelain, M Bergdorf, SE Hieber, ... Euro-Par 2006 Parallel Processing: 12th International Euro-Par Conference …, 2006 | 16 | 2006 |

Desmond/GPU performance as of October 2015 M Bergdorf, S Baxter, CA Rendleman, DE Shaw DE Shaw research, 2015 | 14 | 2015 |

Multiresolution particle methods for the simulation of growth and flow ME Bergdorf ETH Zurich, 2007 | 14 | 2007 |

Desmond/GPU performance as of April 2021 M Bergdorf, A Robinson-Mosher, X Guo, KH Law, DE Shaw DE Shaw Research, Tech. Rep. DESRES/TR–2021-01, 2021 | 13 | 2021 |