Ivan Liachko
Ivan Liachko
Phase Genomics, Inc.
Adresse e-mail validée de phasegenomics.com
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Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
DM Bickhart, BD Rosen, S Koren, BL Sayre, AR Hastie, S Chan, J Lee, ...
Nature genetics 49 (4), 643-650, 2017
3482017
A viable allele of Mcm4 causes chromosome instability and mammary adenocarcinomas in mice
N Shima, A Alcaraz, I Liachko, TR Buske, CA Andrews, RJ Munroe, ...
Nature genetics 39 (1), 93-98, 2007
2932007
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
RD Stewart, MD Auffret, A Warr, AH Wiser, MO Press, KW Langford, ...
Nature communications 9 (1), 1-11, 2018
2302018
Species-level deconvolution of metagenome assemblies with Hi-C–based contact probability maps
JN Burton, I Liachko, MJ Dunham, J Shendure
G3: Genes, Genomes, Genetics 4 (7), 1339-1346, 2014
1432014
The Fitness Consequences of Aneuploidy Are Driven by Condition-Dependent Gene Effects
AB Sunshine, C Payen, GT Ong, I Liachko, KM Tan, MJ Dunham
PLoS Biology 13 (5), e1002155, 2015
742015
Linking the resistome and plasmidome to the microbiome
T Stalder, MO Press, S Sullivan, I Liachko, EM Top
The ISME journal 13 (10), 2437-2446, 2019
682019
An underlying mechanism for the increased mutagenesis of lagging-strand genes in Bacillus subtilis
S Million-Weaver, AN Samadpour, DA Moreno-Habel, P Nugent, ...
Proceedings of the National Academy of Sciences 112 (10), E1096-E1105, 2015
582015
Evolution of protein phosphorylation across 18 fungal species
RA Studer, RA Rodriguez-Mias, KM Haas, JI Hsu, C Viéitez, C Solé, ...
Science 354 (6309), 229-232, 2016
562016
A comprehensive genome-wide map of autonomously replicating sequences in a naive genome
I Liachko, A Bhaskar, C Lee, SCC Chung, BK Tye, U Keich
PLoS Genet 6 (5), e1000946, 2010
502010
High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast
I Liachko, RA Youngblood, U Keich, MJ Dunham
Genome research 23 (4), 698-704, 2013
442013
Alternative mechanisms for coordinating polymerase α and MCM helicase
C Lee, I Liachko, R Bouten, Z Kelman, BK Tye
Molecular and cellular biology 30 (2), 423-435, 2010
432010
Improvement of the threespine stickleback genome using a Hi-C-based proximity-guided assembly
CL Peichel, ST Sullivan, I Liachko, MA White
Journal of Heredity 108 (6), 693-700, 2017
422017
Accurate identification of centromere locations in yeast genomes using Hi-C
N Varoquaux, I Liachko, F Ay, JN Burton, J Shendure, MJ Dunham, ...
Nucleic acids research 43 (11), 5331-5339, 2015
422015
An autonomously replicating sequence for use in a wide range of budding yeasts
I Liachko, MJ Dunham
FEMS yeast research 14 (2), 364-367, 2014
422014
Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus Epichloë festucae
DJ Winter, ARD Ganley, CA Young, I Liachko, CL Schardl, PY Dupont, ...
PLoS genetics 14 (10), e1007467, 2018
402018
Novel DNA binding properties of the Mcm10 protein from Saccharomyces cerevisiae
S Eisenberg, G Korza, J Carson, I Liachko, BK Tye
Journal of biological chemistry 284 (37), 25412-25420, 2009
382009
GC-rich DNA elements enable replication origin activity in the methylotrophic yeast Pichia pastoris
I Liachko, RA Youngblood, K Tsui, KL Bubb, C Queitsch, MK Raghuraman, ...
PLoS Genet 10 (3), e1004169, 2014
372014
A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome
R VanBuren, CM Wai, M Colle, J Wang, S Sullivan, JM Bushakra, ...
Gigascience 7 (8), giy094, 2018
362018
The dynamic three-dimensional organization of the diploid yeast genome
S Kim, I Liachko, DG Brickner, K Cook, WS Noble, JH Brickner, ...
Elife 6, e23623, 2017
352017
Chromosome-scale scaffolding of the black raspberry (Rubus occidentalis L.) genome based on chromatin interaction data
R Jibran, H Dzierzon, N Bassil, JM Bushakra, PP Edger, S Sullivan, ...
Horticulture research 5 (1), 1-11, 2018
332018
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