| Ant colony optimization for resource-constrained project scheduling D Merkle, M Middendorf, H Schmeck IEEE transactions on evolutionary computation 6 (4), 333-346, 2002 | 1174 | 2002 |
| Swarm intelligence: introduction and applications C Blum, D Merkle Springer Science & Business Media, 2008 | 482 | 2008 |
| Bi-criterion optimization with multi colony ant algorithms S Iredi, D Merkle, M Middendorf Evolutionary Multi-Criterion Optimization: First International Conference …, 2001 | 357 | 2001 |
| CREx: inferring genomic rearrangements based on common intervals M Bernt, D Merkle, K Ramsch, G Fritzsch, M Perseke, D Bernhard, ... Bioinformatics 23 (21), 2957-2958, 2007 | 306 | 2007 |
| An ant algorithm with a new pheromone evaluation rule for total tardiness problems D Merkle, M Middendorf Real-World Applications of Evolutionary Computing: EvoWorkshops 2000 …, 2000 | 200 | 2000 |
| Molecular docking with multi-objective particle swarm optimization S Janson, D Merkle, M Middendorf Applied Soft Computing 8 (1), 666-675, 2008 | 147 | 2008 |
| A parameter-adaptive dynamic programming approach for inferring cophylogenies D Merkle, M Middendorf, N Wieseke BMC bioinformatics 11, 1-10, 2010 | 133 | 2010 |
| Modeling the dynamics of ant colony optimization D Merkle, M Middendorf Evolutionary Computation 10 (3), 235-262, 2002 | 130 | 2002 |
| Ant colony optimization with global pheromone evaluation for scheduling a single machine D Merkle, M Middendorf Applied Intelligence 18, 105-111, 2003 | 123 | 2003 |
| Swarm intelligence D Merkle, M Middendorf Search methodologies: introductory tutorials in optimization and decision …, 2013 | 122 | 2013 |
| Evolution of mitochondrial gene orders in echinoderms M Perseke, G Fritzsch, K Ramsch, M Bernt, D Merkle, M Middendorf, ... Molecular Phylogenetics and Evolution 47 (2), 855-864, 2008 | 97 | 2008 |
| Reconstruction of the cophylogenetic history of related phylogenetic trees with divergence timing information D Merkle, M Middendorf Theory in Biosciences 123, 277-299, 2005 | 96 | 2005 |
| A software package for chemically inspired graph transformation JL Andersen, C Flamm, D Merkle, PF Stadler Graph Transformation: 9th International Conference, ICGT 2016, in Memory of …, 2016 | 71 | 2016 |
| An algorithm for inferring mitogenome rearrangements in a phylogenetic tree M Bernt, D Merkle, M Middendorf Comparative Genomics: International Workshop, RECOMB-CG 2008, Paris, France …, 2008 | 65 | 2008 |
| Fast ant colony optimization on runtime reconfigurable processor arrays D Merkle, M Middendorf Genetic Programming and Evolvable Machines 3, 345-361, 2002 | 57 | 2002 |
| Dynamic polyethism and competition for tasks in threshold reinforcement models of social insects D Merkle, M Middendorf Adaptive Behavior 12 (3-4), 251-262, 2004 | 53 | 2004 |
| Inferring chemical reaction patterns using rule composition in graph grammars JL Andersen, C Flamm, D Merkle, PF Stadler Journal of Systems Chemistry 4, 1-14, 2013 | 52 | 2013 |
| A new multi-objective particle swarm optimization algorithm using clustering applied to automated docking S Janson, D Merkle International Workshop on Hybrid Metaheuristics, 128-141, 2005 | 52 | 2005 |
| Chemical transformation motifs—Modelling pathways as integer hyperflows JL Andersen, C Flamm, D Merkle, PF Stadler IEEE/ACM transactions on computational biology and bioinformatics 16 (2 …, 2017 | 50 | 2017 |
| Navigating the chemical space of HCN polymerization and hydrolysis: guiding graph grammars by mass spectrometry data JL Andersen, T Andersen, C Flamm, MM Hanczyc, D Merkle, PF Stadler Entropy 15 (10), 4066-4083, 2013 | 47 | 2013 |
