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Carlos Oliver
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OptiMol: Optimization of Binding Affinities in Chemical Space for Drug Discovery
J Boitreaud, V Mallet, C Oliver, J Waldispuhl
Journal of Chemical Information and Modeling 60 (12), 5658-5666, 2020
602020
Augmented base pairing networks encode RNA-small molecule binding preferences
C Oliver, V Mallet, RS Gendron, V Reinharz, WL Hamilton, N Moitessier, ...
Nucleic Acids Research, 7690-7699,, 2020
372020
Automated, customizable and efficient identification of 3D base pair modules with BayesPairing
R Sarrazin-Gendron, V Reinharz, CG Oliver, N Moitessier, J Waldispühl
Nucleic acids research 47 (7), 3321-3332, 2019
202019
Proposal for a fully decentralized blockchain and proof-of-work algorithm for solving NP-complete problems
CG Oliver, A Ricottone, P Philippopoulos
arXiv preprint arXiv:1708.09419, 2017
192017
Stochastic sampling of structural contexts improves the scalability and accuracy of RNA 3d module identification
R Sarrazin-Gendron, HT Yao, V Reinharz, CG Oliver, Y Ponty, ...
International Conference on Research in Computational Molecular Biology, 186-201, 2020
162020
Vernal: a tool for mining fuzzy network motifs in RNA
C Oliver, V Mallet, P Philippopoulos, WL Hamilton, J Waldispühl
Bioinformatics 38 (4), 970-976, 2022
152022
RNAglib: a python package for RNA 2.5 D graphs
V Mallet, C Oliver, J Broadbent, WL Hamilton, J Waldispühl
Bioinformatics 38 (5), 1458-1459, 2022
112022
Difficulty Scaling in Proof of Work for Decentralized Problem Solving
P Philippopoulos, A Ricottone, CG Oliver
Ledger 5, 2020
112020
ProteinShake: Building datasets and benchmarks for deep learning on protein structures
T Kucera, C Oliver, D Chen, K Borgwardt
Advances in Neural Information Processing Systems 36, 2024
72024
Leveraging binding-site structure for drug discovery with point-cloud methods
V Mallet
McGill University (Canada), 2019
72019
The distribution and evolution of Arabidopsis thaliana cis natural antisense transcripts
J Bouchard, C Oliver, PM Harrison
BMC genomics 16, 1-9, 2015
72015
On the emergence of structural complexity in RNA replicators
CG Oliver, V Reinharz, J Waldispühl
Rna 25 (12), 1579-1591, 2019
62019
Approximate network motif mining via graph learning
C Oliver, D Chen, V Mallet, P Philippopoulos, K Borgwardt
arXiv preprint arXiv:2206.01008, 2022
42022
Concerted millisecond timescale dynamics in the intrinsically disordered carboxyl terminus of γ‐tubulin induced by mutation of a conserved tyrosine residue
J Harris, M Shadrina, C Oliver, J Vogel, A Mittermaier
Protein Science 27 (2), 531-545, 2018
42018
Unsupervised manifold alignment with joint multidimensional scaling
D Chen, B Fan, C Oliver, K Borgwardt
arXiv preprint arXiv:2207.02968, 2022
32022
Endowing Protein Language Models with Structural Knowledge
D Chen, P Hartout, P Pellizzoni, C Oliver, K Borgwardt
arXiv preprint arXiv:2401.14819, 2024
22024
Multimodal learning in clinical proteomics: enhancing antimicrobial resistance prediction models with chemical information
G Visonà, D Duroux, L Miranda, E Sükei, Y Li, K Borgwardt, C Oliver
Bioinformatics 39 (12), btad717, 2023
22023
Structure-and Function-Aware Substitution Matrices via Learnable Graph Matching
P Pellizzoni, C Oliver, K Borgwardt
International Conference on Research in Computational Molecular Biology, 288-307, 2024
2024
3D-based RNA function prediction tools in rnaglib
C Oliver, V Mallet, J Waldispühl
arXiv preprint arXiv:2402.09330, 2024
2024
Semi-supervised learning and large-scale docking data accelerate RNA virtual screening
JG Carvajal-Patino, V Mallet, D Becerra, LF Nino, C Oliver, J Waldispuhl
bioRxiv, 2023.11. 23.568394, 2023
2023
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Articles 1–20