Juan Antonio García Martín
Juan Antonio García Martín
Bioinformatics for Genomics and Proteomics Unit, CNB-CSIC
Verified email at cnb.csic.es
Title
Cited by
Cited by
Year
RNAiFOLD: a constraint programming algorithm for RNA inverse folding and molecular design
JA Garcia-Martin, P Clote, I Dotu
Journal of Bioinformatics and Computational Biology 11 (02), 1350001, 2013
662013
Genome-wide analysis of protein disorder in Arabidopsis thaliana: implications for plant environmental adaptation
N Pietrosemoli, JA García-Martín, R Solano, F Pazos
PloS one 8 (2), e55524, 2013
482013
Protein intrinsic disorder in plants
F Pazos, N Pietrosemoli, JA García-Martín, R Solano
Frontiers in plant science 4, 363, 2013
452013
Complete RNA inverse folding: computational design of functional hammerhead ribozymes
I Dotu, JA Garcia-Martin, BL Slinger, V Mechery, MM Meyer, P Clote
Nucleic acids research 42 (18), 11752-11762, 2014
282014
RNAiFold 2.0: a web server and software to design custom and Rfam-based RNA molecules
JA Garcia-Martin, I Dotu, P Clote
Nucleic Acids Research 43 (W1), W513-W521, 2015
272015
RNAiFold: a web server for RNA inverse folding and molecular design
JA Garcia-Martin, P Clote, I Dotu
Nucleic acids research 41 (W1), W465-W470, 2013
182013
JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures
T Muth, JA García-Martín, A Rausell, D Juan, A Valencia, F Pazos
Bioinformatics 28 (4), 584-586, 2012
152012
RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory
JA Garcia-Martin, AH Bayegan, I Dotu, P Clote
BMC bioinformatics 17 (1), 424, 2016
132016
Practical analysis of specificity-determining residues in protein families
M Chagoyen, JA García-Martín, F Pazos
Briefings in bioinformatics 17 (2), 255-261, 2016
122016
RNA thermodynamic structural entropy
JA Garcia-Martin, P Clote
PloS one 10 (11), e0137859, 2015
122015
WeReview: CRISPR tools—Live repository of computational tools for assisting CRISPR/Cas experiments
R Torres-Perez, JA Garcia-Martin, L Montoliu, JC Oliveros, F Pazos
Bioengineering 6 (3), 63, 2019
102019
Designing synthetic RNAs to determine the relevance of structural motifs in picornavirus IRES elements
J Fernandez-Chamorro, G Lozano, JA Garcia-Martin, J Ramajo, I Dotu, ...
Scientific reports 6, 24243, 2016
92016
Statistical theory of phenotype abundance distributions: A test through exact enumeration of genotype spaces
JA García-Martín, P Catalán, S Manrubia, JA Cuesta
EPL (Europhysics Letters) 123 (2), 28001, 2018
72018
RNAiFold2T: constraint programming design of thermo-IRES switches
JA Garcia-Martin, I Dotu, J Fernandez-Chamorro, G Lozano, J Ramajo, ...
Bioinformatics 32 (12), i360-i368, 2016
72016
New tools to analyze overlapping coding regions
AH Bayegan, JA Garcia-Martin, P Clote
BMC bioinformatics 17 (1), 1-15, 2016
22016
From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics
S Manrubia, JA Cuesta, J Aguirre, SE Ahnert, L Altenberg, AV Cano, ...
arXiv preprint arXiv:2002.00363, 2020
12020
RNA inverse folding and synthetic design
JA Garcia Martin
Boston College. Graduate School of Arts and Sciences, 2016
12016
RNA thermodynamic conformational entropy
JA Garcia Martin, P Clote
Proceedings of the 6th ACM Conference on Bioinformatics, Computational …, 2015
2015
SUPPLEMENTARY INFORMATION FOR “RNAIFOLD2T: CONSTRAINT PROGRAMMING DESIGN OF THERMO-IRES SWITCHES”
JA GARCIA-MARTIN, I DOTU, J FERNANDEZ-CHAMORRO, G LOZANO, ...
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