Joshua E Elias
Joshua E Elias
Chan Zuckerberg Biohub
Verified email at stanford.edu - Homepage
Title
Cited by
Cited by
Year
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
JE Elias, SP Gygi
Nature methods 4 (3), 207-214, 2007
33122007
Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC− MS/MS) for large-scale protein analysis: the yeast proteome
J Peng, JE Elias, CC Thoreen, LJ Licklider, SP Gygi
Journal of proteome research 2 (1), 43-50, 2003
17892003
A proteomics approach to understanding protein ubiquitination
J Peng, D Schwartz, JE Elias, CC Thoreen, D Cheng, G Marsischky, ...
Nature biotechnology 21 (8), 921-926, 2003
17702003
Large-scale characterization of HeLa cell nuclear phosphoproteins
SA Beausoleil, M Jedrychowski, D Schwartz, JE Elias, J VillÚn, J Li, ...
Proceedings of the National Academy of Sciences 101 (33), 12130-12135, 2004
15962004
A tissue-specific atlas of mouse protein phosphorylation and expression
EL Huttlin, MP Jedrychowski, JE Elias, T Goswami, R Rad, SA Beausoleil, ...
Cell 143 (7), 1174-1189, 2010
13602010
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
JE Elias, W Haas, BK Faherty, SP Gygi
Nature methods 2 (9), 667-675, 2005
7792005
Target-decoy search strategy for mass spectrometry-based proteomics
JE Elias, SP Gygi
Proteome bioinformatics, 55-71, 2010
4382010
Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania
SA Smits, J Leach, ED Sonnenburg, CG Gonzalez, JS Lichtman, G Reid, ...
Science 357 (6353), 802-806, 2017
3762017
The phosphoproteomes of Plasmodium falciparum and Toxoplasma gondii reveal unusual adaptations within and beyond the parasites' boundaries
M Treeck, JL Sanders, JE Elias, JC Boothroyd
Cell host & microbe 10 (4), 410-419, 2011
3602011
BRCA1-dependent ubiquitination of γ-tubulin regulates centrosome number
LM Starita, Y Machida, S Sankaran, JE Elias, K Griffin, BP Schlegel, ...
Molecular and cellular biology 24 (19), 8457-8466, 2004
3602004
Intensity-based protein identification by machine learning from a library of tandem mass spectra
JE Elias, FD Gibbons, OD King, FP Roth, SP Gygi
Nature biotechnology 22 (2), 214-219, 2004
3542004
Large-Scale Phosphorylation Analysis of α-Factor-Arrested Saccharomyces cerevisiae
X Li, SA Gerber, AD Rudner, SA Beausoleil, W Haas, J VillÚn, JE Elias, ...
Journal of proteome research 6 (3), 1190-1197, 2007
3492007
A function for cyclin D1 in DNA repair uncovered by protein interactome analyses in human cancers
S Jirawatnotai, Y Hu, W Michowski, JE Elias, L Becks, F Bienvenu, ...
Nature 474 (7350), 230-234, 2011
3172011
Optimization and use of peptide mass measurement accuracy in shotgun proteomics
W Haas, BK Faherty, SA Gerber, JE Elias, SA Beausoleil, CE Bakalarski, ...
Molecular & Cellular Proteomics 5 (7), 1326-1337, 2006
3052006
The Parkinson's disease-associated DJ-1 protein is a transcriptional co-activator that protects against neuronal apoptosis
J Xu, N Zhong, H Wang, JE Elias, CY Kim, I Woldman, C Pifl, SP Gygi, ...
Human molecular genetics 14 (9), 1231-1241, 2005
2932005
Genetic dissection of Flaviviridae host factors through genome-scale CRISPR screens
CD Marceau, AS Puschnik, K Majzoub, YS Ooi, SM Brewer, G Fuchs, ...
Nature 535 (7610), 159-163, 2016
2722016
Transcriptional role of cyclin D1 in development revealed by a genetic–proteomic screen
F Bienvenu, S Jirawatnotai, JE Elias, CA Meyer, K Mizeracka, A Marson, ...
Nature 463 (7279), 374-378, 2010
2602010
Quantitative imaging of gut microbiota spatial organization
KA Earle, G Billings, M Sigal, JS Lichtman, GC Hansson, JE Elias, ...
Cell host & microbe 18 (4), 478-488, 2015
2582015
Proteomic profiling of γ-secretase substrates and mapping of substrate requirements
ML Hemming, JE Elias, SP Gygi, DJ Selkoe
PLoS Biol 6 (10), e257, 2008
1812008
Identification of β-secretase (BACE1) substrates using quantitative proteomics
ML Hemming, JE Elias, SP Gygi, DJ Selkoe
PloS one 4 (12), e8477, 2009
1742009
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Articles 1–20