Anna-Sophie Fiston-Lavier, PhD
Anna-Sophie Fiston-Lavier, PhD
Associate professor, University of Montpellier, ISEM, Institut Universitaire de France-Junior Member
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Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly repetitive transposable elements
RC McCoy, RW Taylor, TA Blauwkamp, JL Kelley, M Kertesz, ...
Plos One, 2014
Formation of plant metabolic gene clusters within dynamic chromosomal regions
B Field, AS Fiston-Lavier, A Kemen, K Geisler, H Quesneville, ...
Proceedings of the National Academy of Sciences 108 (38), 16116-16121, 2011
Population Genomics of Transposable Elements in Drosophila melanogaster
DA Petrov, AS Fiston-Lavier, M Lipatov, K Lenkov, J González
Molecular biology and evolution 28 (5), 1633-1644, 2011
Population Genomics of Transposable Elements in Drosophila
MG Barrón, AS Fiston-Lavier, DA Petrov, J González
Annual review of genetics 48, 561-581, 2014
Compact genome of the Antarctic midge is likely an adaptation to an extreme environment
JL Kelley, JT Peyton, AS Fiston-Lavier, NM Teets, MC Yee, JS Johnston, ...
Nature communications 5 (1), 4611, 2014
Drosophila melanogaster recombination rate calculator
AS Fiston-Lavier, ND Singh, M Lipatov, DA Petrov
Gene 463 (1), 18-20, 2009
A model of segmental duplication formation in Drosophila melanogaster
AS Fiston-Lavier, D Anxolabehere, H Quesneville
Genome Research 17 (10), 1458-1470, 2007
A call for benchmarking transposable element annotation methods
DR Hoen, G Hickey, G Bourque, J Casacuberta, R Cordaux, C Feschotte, ...
Mobile DNA 6, 1-9, 2015
The ace-1 Locus Is Amplified in All Resistant Anopheles gambiae Mosquitoes: Fitness Consequences of Homogeneous and Heterogeneous Duplications
BS Assogba, P Milesi, LS Djogbénou, A Berthomieu, P Makoundou, ...
PLoS Biology 14 (12), e2000618, 2016
Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila
GE Rech, M Bogaerts-Marquez, MG Barrón, M Merenciano, ...
PLoS Genetics 15 (2), e1007900, 2019
T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data
FL Anna-Sophie, B Maite G., P Dmitri A., G Josefa
Nucleic acids research, 2014
T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data
AS Fiston-Lavier, M Carrigan, DA Petrov, J González
Nucleic acids research 39 (6), e36-e36, 2011
Impact of transposable elements on insect genomes and biology
F Maumus, AS Fiston-Lavier, H Quesneville
Current opinion in insect science 7, 30-36, 2015
Detection of transposable elements by their compositional bias
O Andrieu, AS Fiston, D Anxolabéhère, H Quesneville
BMC bioinformatics 5, 1-13, 2004
The somatic piRNA pathway controls germline transposition over generations
B Barckmann, M El-Barouk, A Pélisson, B Mugat, B Li, C Franckhauser, ...
Nucleic acids research 46 (18), 9524-9536, 2018
PlasForest: a homology-based random forest classifier for plasmid detection in genomic datasets
L Pradier, T Tissot, AS Fiston-Lavier, S Bedhomme
BMC bioinformatics 22 (1), 349, 2021
Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia
X Zhu, B Zhou, R Pattni, K Gleason, C Tan, A Kalinowski, S Sloan, ...
Nature Neuroscience, 1-11, 2021
Transposable element sequence evolution is influenced by gene context
AS Fiston-Lavier, CE Vejnar, H Quesneville
arXiv preprint arXiv:1209.0176, 2012
T-lex3 : an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data
M Bogaerts-Márquez, MG Barrón, AS Fiston-Lavier, P Vendrell-Mir, ...
Bioinformatics 36 (4), 1191-1197, 2020
Cyprinid herpesvirus 3 Evolves In Vitro through an Assemblage of Haplotypes that Alternatively Become Dominant or Under-Represented
S Klafack, AS Fiston-Lavier, SM Bergmann, S Hammoumi, L Schröder, ...
Viruses 11 (8), 754, 2019
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