| Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly repetitive transposable elements RC McCoy, RW Taylor, TA Blauwkamp, JL Kelley, M Kertesz, ... Plos One, 2014 | 331 | 2014 |
| Formation of plant metabolic gene clusters within dynamic chromosomal regions B Field, AS Fiston-Lavier, A Kemen, K Geisler, H Quesneville, ... Proceedings of the National Academy of Sciences 108 (38), 16116-16121, 2011 | 269 | 2011 |
| Population Genomics of Transposable Elements in Drosophila MG Barrón, AS Fiston-Lavier, DA Petrov, J González Annual review of genetics 48 (1), 561-581, 2014 | 173 | 2014 |
| Compact genome of the Antarctic midge is likely an adaptation to an extreme environment JL Kelley, JT Peyton, AS Fiston-Lavier, NM Teets, MC Yee, JS Johnston, ... Nature communications 5 (1), 4611, 2014 | 172 | 2014 |
| Population Genomics of Transposable Elements in Drosophila melanogaster DA Petrov, AS Fiston-Lavier, M Lipatov, K Lenkov, J González Molecular biology and evolution 28 (5), 1633-1644, 2011 | 171 | 2011 |
| Drosophila melanogaster recombination rate calculator AS Fiston-Lavier, ND Singh, M Lipatov, DA Petrov Gene 463 (1), 18-20, 2009 | 165 | 2009 |
| A call for benchmarking transposable element annotation methods DR Hoen, G Hickey, G Bourque, J Casacuberta, R Cordaux, C Feschotte, ... Mobile DNA 6, 1-9, 2015 | 97 | 2015 |
| A model of segmental duplication formation in Drosophila melanogaster AS Fiston-Lavier, D Anxolabehere, H Quesneville Genome Research 17 (10), 1458-1470, 2007 | 97 | 2007 |
| Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila GE Rech, M Bogaerts-Marquez, MG Barrón, M Merenciano, ... PLoS Genetics 15 (2), e1007900, 2019 | 77 | 2019 |
| The ace-1 Locus Is Amplified in All Resistant Anopheles gambiae Mosquitoes: Fitness Consequences of Homogeneous and Heterogeneous Duplications BS Assogba, P Milesi, LS Djogbénou, A Berthomieu, P Makoundou, ... PLoS Biology 14 (12), e2000618, 2016 | 77 | 2016 |
| T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data FL Anna-Sophie, B Maite G., P Dmitri A., G Josefa Nucleic acids research, 2014 | 67* | 2014 |
| T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data AS Fiston-Lavier, M Carrigan, DA Petrov, J González Nucleic acids research 39 (6), e36-e36, 2011 | 65 | 2011 |
| Impact of transposable elements on insect genomes and biology F Maumus, AS Fiston-Lavier, H Quesneville Current opinion in insect science 7, 30-36, 2015 | 56 | 2015 |
| The somatic piRNA pathway controls germline transposition over generations B Barckmann, M El-Barouk, A Pélisson, B Mugat, B Li, C Franckhauser, ... Nucleic acids research 46 (18), 9524-9536, 2018 | 44 | 2018 |
| Detection of transposable elements by their compositional bias O Andrieu, AS Fiston, D Anxolabéhère, H Quesneville BMC bioinformatics 5, 1-13, 2004 | 44 | 2004 |
| PlasForest: a homology-based random forest classifier for plasmid detection in genomic datasets L Pradier, T Tissot, AS Fiston-Lavier, S Bedhomme BMC bioinformatics 22 (1), 349, 2021 | 40 | 2021 |
| Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia X Zhu, B Zhou, R Pattni, K Gleason, C Tan, A Kalinowski, S Sloan, ... Nature Neuroscience, 1-11, 2021 | 26 | 2021 |
| Transposable element sequence evolution is influenced by gene context AS Fiston-Lavier, CE Vejnar, H Quesneville arXiv preprint arXiv:1209.0176, 2012 | 16 | 2012 |
| T-lex3 : an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data M Bogaerts-Márquez, MG Barrón, AS Fiston-Lavier, P Vendrell-Mir, ... Bioinformatics 36 (4), 1191-1197, 2020 | 13 | 2020 |
| TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches M Mohamed, F Sabot, M Varoqui, B Mugat, K Audouin, A Pélisson, ... Genome Biology 24 (1), 63, 2023 | 10 | 2023 |
Dmitri A PetrovMichelle&Kevin Douglas Professor of Biology, Stanford, pdfs are free: http://petrov.stanford.eduAdresse e-mail validée de stanford.edu
