| COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology D Domingo-Fernandez, S Baksi, B Schultz, Y Gadiya, R Karki, T Raschka, ... Bioinformatics, btaa834, 2020 | 126 | 2020 |
| The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling S Mubeen, CT Hoyt, A Gemünd, M Hofmann-Apitius, H Fröhlich, ... Frontiers in Genetics 10, 1203, 2019 | 113 | 2019 |
| Using multi-scale genetic, neuroimaging and clinical data for predicting Alzheimer’s disease and reconstruction of relevant biological mechanisms S Khanna, D Domingo-Fernández, A Iyappan, MA Emon, ... Scientific reports 8 (1), 11173, 2018 | 66 | 2018 |
| ComPath: An ecosystem for exploring, analyzing, and curating mappings across pathway databases D Domingo-Fernández, CT Hoyt, C Bobis-Álvarez, J Marin-Llao, ... npj Systems Biology and Applications 4 (1), 43, 2018 | 61* | 2018 |
| Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment D Domingo-Fernández, AT Kodamullil, A Iyappan, M Naz, MA Emon, ... Bioinformatics 33 (22), 3679-3681, 2017 | 44 | 2017 |
| PathMe: Merging and exploring mechanistic pathway knowledge D Domingo-Fernández, S Mubeen, J Marín-Llaó, CT Hoyt, ... BMC Bioinformatics 20 (1), 243, 2019 | 43 | 2019 |
| BioKEEN: a library for learning and evaluating biological knowledge graph embeddings M Ali, CT Hoyt, D Domingo-Fernández, J Lehmann, H Jabeen Bioinformatics 35 (18), 3538-3540, 2019 | 35 | 2019 |
| Evaluating the Alzheimer's disease data landscape C Birkenbihl, Y Salimi, D Domingo‐Fernándéz, S Lovestone, ... Alzheimer's & Dementia: Translational Research & Clinical Interventions 6 (1 …, 2020 | 34 | 2020 |
| Re-curation and rational enrichment of knowledge graphs in Biological Expression Language CT Hoyt, D Domingo-Fernández, R Aldisi, L Xu, K Kolpeja, S Spalek, ... Database 2019, baz068, 2019 | 31 | 2019 |
| On the influence of several factors on pathway enrichment analysis S Mubeen, A Tom Kodamullil, M Hofmann-Apitius, D Domingo-Fernández Briefings in bioinformatics 23 (3), bbac143, 2022 | 29 | 2022 |
| Linking COVID-19 and heme-driven pathophysiologies: A combined computational–experimental approach MT Hopp, D Domingo-Fernandez, Y Gadiya, MS Detzel, R Graf, ... Biomolecules 11 (5), 644, 2021 | 28* | 2021 |
| Drug2ways: Reasoning over causal paths in biological networks for drug discovery D Rivas-Barragan, S Mubeen, F Guim-Bernat, M Hofmann-Apitius, ... PLOS Computational Biology 16 (12), e1008464, 2020 | 25 | 2020 |
| Unifying the identification of biomedical entities with the Bioregistry CT Hoyt, M Balk, TJ Callahan, D Domingo-Fernández, MA Haendel, ... Scientific data 9 (1), 714, 2022 | 24 | 2022 |
| STonKGs: a sophisticated transformer trained on biomedical text and knowledge graphs H Balabin, CT Hoyt, C Birkenbihl, BM Gyori, JA Bachman, PG Ploeger, ... Bioinformatics, btac001, 2022 | 23 | 2022 |
| Clustering of Alzheimer’s and Parkinson’s disease based on genetic burden of shared molecular mechanisms MA Emon, A Heinson, P Wu, D Domingo-Fernández, M Sood, H Vrooman, ... Scientific Reports 10 (1), 19097, 2020 | 23 | 2020 |
| BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language CT Hoyt, D Domingo-Fernández, M Hofmann-Apitius Database 2018, bay126, 2018 | 23 | 2018 |
| Challenges of Integrative Disease Modeling in Alzheimer’s disease S Golriz Khatami, C Robinson, C Birkenbihl, D Domingo-Fernández, ... Frontiers in Molecular Biosciences 6, 158, 2020 | 22 | 2020 |
| A computational approach for mapping heme biology in the context of hemolytic disorders F Humayun, D Domingo-Fernández, AA Paul George, MT Hopp, ... Frontiers in bioengineering and biotechnology 8, 74, 2020 | 19 | 2020 |
| A method for the rational selection of drug repurposing candidates from multimodal knowledge harmonization BT Schultz, A Zaliani, C Ebeling, J Reinshagen, D Bojkova, ... Scientific Reports 11 (11049), 2020 | 19* | 2020 |
| PTSD Biomarker Database: Deep Dive Meta-database for PTSD Biomarkers, Visualizations, and Analysis Tools D Domingo-Fernandez, A Provost, J Marin-Llao, H Lasseter, K Diaz, ... Database 2019, baz081, 2019 | 19 | 2019 |
Martin Hofmann-ApitiusProfessor für Angewandte Life Science Informatik, Universität BonnVerified email at scai.fraunhofer.de
