Charlotte Bunne
Charlotte Bunne
Professor of Computer Science and Life Sciences
Verified email at - Homepage
Cited by
Cited by
Independent SE (3)-Equivariant Models for End-to-End Rigid Protein Docking
OE Ganea, X Huang, C Bunne, Y Bian, R Barzilay, T Jaakkola, A Krause
International Conference on Learning Representations (ICLR) 10, 2022
Learning Graph Models for Retrosynthesis Prediction
VR Somnath, C Bunne, CW Coley, A Krause, R Barzilay
Neural Information Processing Systems (NeurIPS) 34, 2021
Learning Generative Models across Incomparable Spaces
C Bunne, D Alvarez-Melis, A Krause, S Jegelka
International Conference on Machine Learning (ICML) 97, 2019
Machine intelligence for chemical reaction space
P Schwaller, AC Vaucher, R Laplaza, C Bunne, A Krause, C Corminboeuf, ...
Wiley Interdisciplinary Reviews: Computational Molecular Science 12 (5), e1604, 2022
Proximal Optimal Transport Modeling of Population Dynamics
C Bunne, L Meng-Papaxanthos, A Krause, M Cuturi
International Conference on Artificial Intelligence and Statistics (AISTATS) 25, 2022
Multi-Scale Representation Learning on Proteins
VR Somnath, C Bunne, A Krause
Neural Information Processing Systems (NeurIPS) 34, 2021
Learning Single-Cell Perturbation Responses using Neural Optimal Transport
C Bunne, S Stark, G Gut, JS del Castillo, M Levesque, K Van Lehmann, ...
Nature Methods, 2023
Optimal Transport Tools (OTT): A JAX Toolbox for all things Wasserstein
M Cuturi, L Meng-Papaxanthos, Y Tian, C Bunne, G Davis, O Teboul
arXiv preprint arXiv:2201.12324, 2022
Supervised Training of Conditional Monge Maps
C Bunne, A Krause, M Cuturi
Neural Information Processing Systems (NeurIPS) 35, 2022
The Schrödinger Bridge between Gaussian Measures has a Closed Form
C Bunne, YP Hsieh, M Cuturi, A Krause
International Conference on Artificial Intelligence and Statistics (AISTATS …, 2023
Aligned Diffusion Schrödinger Bridges
VR Somnath, M Pariset, YP Hsieh, MR Martinez, A Krause, C Bunne
Uncertainty in Artificial Intelligence (UAI), 2023
Backbone circularization of Bacillus subtilis family 11 xylanase increases its thermostability and its resistance against aggregation
MC Waldhauer, SN Schmitz, C Ahlmann-Eltze, JG Gleixner, CC Schmelas, ...
Molecular BioSystems 11 (12), 3231-3243, 2015
Invariant Causal Mechanisms through Distribution Matching
M Chevalley, C Bunne, A Krause, S Bauer
arXiv preprint arXiv:2206.11646, 2022
Neural Unbalanced Optimal Transport via Cycle-Consistent Semi-Couplings
F Lübeck, C Bunne, G Gut, JS del Castillo, L Pelkmans, D Alvarez-Melis
arXiv preprint arXiv:2209.15621, 2022
Studying Invariances of Trained Convolutional Neural Networks
C Bunne, L Rahmann, T Wolf
arXiv preprint arXiv:1803.05963, 2018
COSIFER: a Python package for the consensus inference of molecular interaction networks
M Manica, C Bunne, R Mathis, J Cadow, ME Ahsen, GA Stolovitzky, ...
Bioinformatics 37 (14), 2070-2072, 2021
Reproducible image-based profiling with Pycytominer
E Serrano, SN Chandrasekaran, D Bunten, KI Brewer, J Tomkinson, ...
arXiv preprint arXiv:2311.13417, 2023
Unbalanced Diffusion Schrödinger Bridge
M Pariset, YP Hsieh, C Bunne, A Krause, V De Bortoli
arXiv preprint arXiv:2306.09099, 2023
Exponential Growth of Glioblastoma In Vivo Driven by Rapidly Dividing and Outwardly Migrating Cancer Stem Cells
L Buchauer, MA Khan, Y Zhuo, C Shao, P Zou, W Feng, M Qian, G Bekki, ...
BioRxiv, 723601, 2019
Transition Path Sampling with Boltzmann Generator-based MCMC Moves
M Plainer, H Stärk, C Bunne, S Günnemann
arXiv preprint arXiv:2312.05340, 2023
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