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Yi Liao
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Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
S Ou, W Su, Y Liao, K Chougule, JRA Agda, AJ Hellinga, CSB Lugo, ...
Genome biology 20 (1), 1-18, 2019
3732019
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
JC Stein, Y Yu, D Copetti, DJ Zwickl, L Zhang, C Zhang, K Chougule, ...
Nature genetics 50 (2), 285-296, 2018
3702018
Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution
J Chen, Q Huang, D Gao, J Wang, Y Lang, T Liu, B Li, Z Bai, ...
Nature Communications 4 (1), 1595, 2013
1832013
Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences
ZY Gao, SC Zhao, WM He, LB Guo, YL Peng, JJ Wang, XS Guo, ...
Proceedings of the National Academy of Sciences 110 (35), 14492-14497, 2013
1682013
Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations
P Qin, H Lu, H Du, H Wang, W Chen, Z Chen, Q He, S Ou, H Zhang, X Li, ...
Cell 184 (13), 3542-3558. e16, 2021
1602021
Population genetics of the coral Acropora millepora: Toward genomic prediction of bleaching
ZL Fuller, VJL Mocellin, LA Morris, N Cantin, J Shepherd, L Sarre, J Peng, ...
Science 369 (6501), eaba4674, 2020
1512020
Role of gene body methylation in acclimatization and adaptation in a basal metazoan
G Dixon, Y Liao, LK Bay, MV Matz
Proceedings of the National Academy of Sciences 115 (52), 13342-13346, 2018
972018
Evolutionary Genomics of Structural Variation in Asian Rice (Oryza sativa) Domestication
Y Kou, Y Liao, T Toivainen, Y Lv, X Tian, JJ Emerson, BS Gaut, Y Zhou
Molecular Biology and Evolution 37 (12), 3507-3524, 2020
472020
Evolution of genome structure in the Drosophila simulans species complex
M Chakraborty, CH Chang, DE Khost, J Vedanayagam, JR Adrion, Y Liao, ...
Genome research 31 (3), 380-396, 2021
442021
The impact and origin of copy number variations in the Oryza species
Z Bai, J Chen, Y Liao, M Wang, R Liu, S Ge, RA Wing, M Chen
BMC genomics 17, 1-12, 2016
432016
Topologically associating domains and their role in the evolution of genome structure and function in Drosophila
Y Liao, X Zhang, M Chakraborty, JJ Emerson
Genome Research 31 (3), 397-410, 2021
302021
Environmental specialization and cryptic genetic divergence in two massive coral species from the Florida Keys Reef Tract
JP Rippe, G Dixon, ZL Fuller, Y Liao, M Matz
Molecular Ecology 30 (14), 3468-3484, 2021
272021
Comparison of Oryza sativa and Oryza brachyantha Genomes Reveals Selection-Driven Gene Escape from the Centromeric Regions
Y Liao, X Zhang, B Li, T Liu, J Chen, Z Bai, M Wang, J Shi, JG Walling, ...
The Plant Cell 30 (8), 1729-1744, 2018
222018
AFLP and SCAR markers associated with peel color in eggplant (Solanum melongena)
L Yi, B SUN, G SUN, H LIU, Z LI, Z LI, G WANG, R CHEN
Agricultural Sciences in China 8 (12), 1466-1474, 2009
212009
The 3D architecture of the pepper genome and its relationship to function and evolution
Y Liao, J Wang, Z Zhu, Y Liu, J Chen, Y Zhou, F Liu, J Lei, BS Gaut, B Cao, ...
Nature Communications 13 (1), 3479, 2022
92022
Population genetics of the coral Acropora millepora: Towards a genomic predictor of bleaching. bioRxiv.: 867754
ZL Fuller, VJL Mocellin, L Morris, N Cantin, J Shepherd, L Sarre, J Peng, ...
52019
Towards a genomic predictor of bleaching in the coral Acropora millepora
ZL Fuller, VJL Mocellin, L Morris, N Cantin, J Shepherd, L Sarre, J Peng, ...
Science, 2020
32020
Gene body methylation is involved in coarse genome-wide adjustment of gene expression during acclimatization
G Dixon, Y Liao, LK Bay, MV Matz
bioRxiv, 184457, 2017
12017
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline (vol 20, 275, 2019)
S Ou, W Su, Y Liao, K Chougule, JRA Agda, AJ Hellinga, CSB Lugo, ...
GENOME BIOLOGY 23 (1), 2022
2022
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline [Erratum: December 2021, v. 23 (1), p. 76]
S Ou, W Su, Y Liao, K Chougule, JRA Agda, AJ Hellinga, CSB Lugo, ...
2019
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