Allison Regier
Allison Regier
Senior Bioinformatics Scientist, DNANexus, Inc
Adresse e-mail validée de dnanexus.com
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Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle
EF Kirkness, BJ Haas, W Sun, HR Braig, MA Perotti, JM Clark, SH Lee, ...
Proceedings of the National Academy of Sciences 107 (27), 12168-12173, 2010
4592010
Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences
MKN Lawniczak, SJ Emrich, AK Holloway, AP Regier, M Olson, B White, ...
Science 330 (6003), 512-514, 2010
2902010
Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects
AA Regier, Y Farjoun, D Larson, O Krasheninina, HM Kang, DP Howrigan, ...
bioRxiv, 269316, 2018
952018
Genome Modeling System: A Knowledge Management Platform for Genomics
M Griffith, OL Griffith, SM Smith, A Ramu, MB Callaway, AM Brummett, ...
PLoS Comput Biol 11 (7), e1004274, 2015
712015
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ...
Science, 2021
552021
Mapping and characterization of structural variation in 17,795 human genomes
HJ Abel, DE Larson, AA Regier, C Chiang, I Das, KL Kanchi, RM Layer, ...
Nature 583 (7814), 83-89, 2020
532020
Breakpoint structure of the Anopheles gambiae 2Rb chromosomal inversion
NF Lobo, DM Sangaré, AA Regier, KR Reidenbach, DA Bretz, ...
Malar. J 9, 293, 2010
372010
High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum
U Samarakoon, A Regier, A Tan, BA Desany, B Collins, JC Tan, ...
BMC genomics 12 (1), 116, 2011
332011
High coverage whole genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios
M Byrska-Bishop, US Evani, X Zhao, AO Basile, HJ Abel, AA Regier, ...
bioRxiv, 2021
162021
A strategy for building and using a human reference pangenome
B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ...
F1000Research 8 (1751), 1751, 2019
42019
Association of Structural Variation with Cardiometabolic Traits in Finns
L Chen, HJ Abel, I Das, DE Larson, L Ganel, KL Kanchi, AA Regier, ...
bioRxiv, 2020
32020
Mitochondrial genome copy number in human blood-derived DNA is strongly associated with insulin levels and related metabolic traits and primarily reflects cell-type composition …
L Ganel, L Chen, R Christ, J Vangipurapu, E Young, I Das, K Kanchi, ...
medRxiv, 2020
12020
A Flexible Comparative Genomics Framework for Integrating Heterogeneous Sequence Data
AAP Regier
12011
Alignment and analysis of closely related genomes
A Regier, M Olson, S Emrich
Bioinformatics and Computational Biology, 343-352, 2009
12009
Mosaicing videos to stream over multiple independent channels
C Boehnen, A Regier, D Thomas, S Chandra, P Flynn
Proceedings of the 17th NOSSDAV Conference, 2007
12007
Mitochondrial genome copy number measured by DNA sequencing in human blood is strongly associated with metabolic traits via cell-type composition differences
L Ganel, L Chen, R Christ, J Vangipurapu, E Young, I Das, K Kanchi, ...
medRxiv, 2020.10. 23.20218586, 2021
2021
Genomic and transcriptomic somatic alterations of hepatocellular carcinoma in non-cirrhotic livers
OL Griffith, Y Lin, M Griffith, J Hundal, A Regier, R Fulton, EM Brunt, ...
Cancer Research 74 (19 Supplement), 5181-5181, 2014
2014
EXAMINING THE FINE SCALE STRUCTURE OF THE CROSSOVER LANDSCAPE IN PLASMODIUM FALCIPARUM BY HIGH-THROUGHPUT ALLELE SCANNING
U Samarakoon, A Regier, A Tan, SJ Emrich, MT Ferdig
AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE 83 (5), 281-281, 2010
2010
Challenges in working with draft genomes
AAP Regier
University of Notre Dame, 2008
2008
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