| Oral phage therapy of acute bacterial diarrhea with two coliphage preparations: a randomized trial in children from Bangladesh SA Sarker, S Sultana, G Reuteler, D Moine, P Descombes, F Charton, ... EBioMedicine 4, 124-137, 2016 | 231 | 2016 |
| Red squirrels in the British Isles are infected with leprosy bacilli C Avanzi, J del-Pozo, A Benjak, K Stevenson, VR Simpson, P Busso, ... Science 354 (6313), 744-747, 2016 | 104 | 2016 |
| Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues CJ Meehan, GA Goig, TA Kohl, L Verboven, A Dippenaar, M Ezewudo, ... Nature Reviews Microbiology 17 (9), 533-545, 2019 | 78 | 2019 |
| Phylogenomics and antimicrobial resistance of the leprosy bacillus Mycobacterium leprae A Benjak, C Avanzi, P Singh, C Loiseau, S Girma, P Busso, ANB Fontes, ... Nature communications 9 (1), 1-11, 2018 | 54 | 2018 |
| A new phylogenetic framework for the animal-adapted Mycobacterium tuberculosis complex D Brites, C Loiseau, F Menardo, S Borrell, MB Boniotti, R Warren, ... Frontiers in microbiology 9, 2820, 2018 | 45 | 2018 |
| Whole genome sequencing distinguishes between relapse and reinfection in recurrent leprosy cases MMA Stefani, C Avanzi, S Bührer-Sékula, A Benjak, C Loiseau, P Singh, ... PLoS neglected tropical diseases 11 (6), e0005598, 2017 | 27 | 2017 |
| Whole-genome sequencing for drug resistance profile prediction in Mycobacterium tuberculosis SM Gygli, PM Keller, M Ballif, N Blöchliger, R Hömke, M Reinhard, ... Antimicrobial agents and chemotherapy 63 (4), 2019 | 25 | 2019 |
| Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity F Menardo, C Loiseau, D Brites, M Coscolla, SM Gygli, LK Rutaihwa, ... BMC bioinformatics 19 (1), 164, 2018 | 25 | 2018 |
| A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region JCS Ngabonziza, C Loiseau, M Marceau, A Jouet, F Menardo, O Tzfadia, ... Nature Communications 11 (1), 1-11, 2020 | 22 | 2020 |
| Transmission of drug-resistant leprosy in Guinea-Conakry detected using molecular epidemiological approaches C Avanzi, P Busso, A Benjak, C Loiseau, A Fomba, G Doumbia, I Camara, ... Clinical Infectious Diseases 63 (11), 1482-1484, 2016 | 20 | 2016 |
| Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development S Borrell, A Trauner, D Brites, L Rigouts, C Loiseau, M Coscolla, ... PloS one 14 (3), 2019 | 19 | 2019 |
| Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches ID Otchere, M Coscollá, L Sánchez-Busó, A Asante-Poku, D Brites, ... Scientific reports 8 (1), 11269, 2018 | 19 | 2018 |
| Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis JL Payne, F Menardo, A Trauner, S Borrell, SM Gygli, C Loiseau, ... PLoS biology 17 (5), e3000265, 2019 | 18 | 2019 |
| The genome of the toluene-degrading Pseudomonas veronii strain 1YdBTEX2 and its differential gene expression in contaminated sand M Morales, V Sentchilo, C Bertelli, A Komljenovic, N Kryuchkova-Mostacci, ... PloS one 11 (11), e0165850, 2016 | 14 | 2016 |
| Revised interpretation of the Hain Lifescience GenoType MTBC to differentiate Mycobacterium canettii and members of the Mycobacterium tuberculosis complex C Loiseau, D Brites, I Moser, F Coll, C Pourcel, S Robbe-Austerman, ... Antimicrobial agents and chemotherapy 63 (6), e00159-19, 2019 | 8 | 2019 |
| An African origin for Mycobacterium bovis C Loiseau, F Menardo, A Aseffa, E Hailu, B Gumi, G Ameni, S Berg, ... Evolution, medicine, and public health 2020 (1), 49-59, 2020 | 7 | 2020 |
| The Genetic Background Modulates the Evolution of Fluoroquinolone-Resistance in Mycobacterium tuberculosis RAD Castro, A Ross, L Kamwela, M Reinhard, C Loiseau, J Feldmann, ... Molecular biology and evolution 37 (1), 195-207, 2020 | 7 | 2020 |
| Tuberculosis in Swiss captive Asian elephants: microevolution of Mycobacterium tuberculosis characterized by multilocus variable-number tandem-repeat analysis and whole-genome … G Ghielmetti, M Coscolla, M Ruetten, U Friedel, C Loiseau, J Feldmann, ... Scientific reports 7 (1), 14647, 2017 | 7 | 2017 |
| Natural Polymorphisms in Mycobacterium tuberculosis Conferring Resistance to Delamanid in Drug-naïve Patients ML Reichmuth, R Hömke, K Zürcher, P Sander, A Avihingsanon, ... Antimicrobial agents and chemotherapy 64 (11), 2020 | | 2020 |
| HIV coinfection is associated with low fitness rpoB variants in rifampicin-resistant Mycobacterium tuberculosis C Loiseau, D Brites, M Reinhard, K Zürcher, S Borrell, M Ballif, L Fenner, ... Antimicrobial Agents and Chemotherapy, 2020 | | 2020 |
