Michael Bada

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Coauteurs

Lawrence HunterProfessor of Pharmacology, University of Colorado School of MedicineAdresse e-mail validée de CUAnschutz.edu
William A Baumgartner JrResearch Associate, University of Colorado DenverAdresse e-mail validée de ucdenver.edu
Karin VerspoorProfessor, School of Computing and Information Systems; The University of MelbourneAdresse e-mail validée de unimelb.edu.au
Russ B AltmanProfessor Stanford UniversityAdresse e-mail validée de stanford.edu
Christopher FunkPhD student, University of Colorado Medical SchoolAdresse e-mail validée de ucdenver.edu
Martha Stone PalmerProfessor of Linguistics, Computer Science, University of ColoradoAdresse e-mail validée de colorado.edu
Christopher J MungallLawrence Berkeley National LaboratoryAdresse e-mail validée de lbl.gov
Judith BlakeProfessor of Mammalian GeneticsAdresse e-mail validée de jax.org
Michelle Whirl-CarrilloStanford UniversityAdresse e-mail validée de stanford.edu
Christophe RoederUCDenverAdresse e-mail validée de ucdenver.edu
Jane LomaxSciBiteAdresse e-mail validée de scibite.com
Robert StevensProfessor of Computer Science, Department of Computer Science, university of manchesterAdresse e-mail validée de manchester.ac.uk
Amelia IrelandUnaffiliatedAdresse e-mail validée de gmod.org
Zhiyong LuDeputy Director for Literature Search, NCBI; Senior Investigator, NCBI-NLMAdresse e-mail validée de nih.gov
J. Michael CherryStanford University, Department of GeneticsAdresse e-mail validée de stanford.edu
Carole GobleProfessor of Computer Science, University of ManchesterAdresse e-mail validée de cs.man.ac.uk
Yolanda GilResearch Professor of Computer Science, University of Southern CaliforniaAdresse e-mail validée de isi.edu
Suzanna LewisLawrence Berkeley National LaboratoryAdresse e-mail validée de lbl.gov
Xiaoqian ChaiAssistant Professor, McGill UniversityAdresse e-mail validée de mcgill.ca
Jinho D. ChoiAssistant Professor, Emory UniversityAdresse e-mail validée de emory.edu

Michael Bada

Research Associate, University of Colorado Anschutz Medical Campus

Adresse e-mail validée de ucdenver.edu

bioinformatics ontologies knowledge representation annotation corpora


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Concept annotation in the CRAFT corpus M Bada, M Eckert, D Evans, K Garcia, K Shipley, D Sitnikov, ... BMC bioinformatics 13 (1), 1-20, 2012	185	2012
Cross-product extensions of the Gene Ontology CJ Mungall, M Bada, TZ Berardini, J Deegan, A Ireland, MA Harris, ... Journal of biomedical informatics 44 (1), 80-86, 2011	140	2011
A short study on the success of the Gene Ontology M Bada, R Stevens, C Goble, Y Gil, M Ashburner, JA Blake, JM Cherry, ... Journal of web semantics 1 (2), 235-240, 2004	134	2004
RiboWeb: An ontology-based system for collaborative molecular biology RB Altman, M Buda, XJ Chai, MW Carillo, RO Chen, NF Abernethy IEEE Intelligent Systems and Their Applications 14 (5), 68-76, 1999	128	1999
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools KM Verspoor, KB Cohen, A Lanfranchi, C Warner, HL Johnson, C Roeder, ... BMC bioinformatics, 2011	104	2011
Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters C Funk, W Baumgartner, B Garcia, C Roeder, M Bada, KB Cohen, ... BMC bioinformatics 15 (1), 1-29, 2014	96	2014
KaBOB: ontology-based semantic integration of biomedical databases KM Livingston, M Bada, WA Baumgartner, LE Hunter BMC bioinformatics 16 (1), 1-21, 2015	63	2015
Computational modeling of structural experimental data MA Bada, RB Altman Methods in enzymology 317, 470-484, 2000	52	2000
Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology DP Hill, N Adams, M Bada, C Batchelor, TZ Berardini, H Dietze, ... BMC genomics 14 (1), 1-10, 2013	51	2013
Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies HL Johnson, KB Cohen, WA Baumgartner Jr, Z Lu, M Bada, T Kester, ... Biocomputing 2006, 28-39, 2006	48	2006
Enrichment of OBO ontologies M Bada, L Hunter Journal of Biomedical Informatics 40 (3), 300-315, 2007	45	2007
Using reasoning to guide annotation with gene ontology terms in GOAT M Bada, D Turi, R McEntire, R Stevens ACM SIGMOD Record 33 (2), 27-32, 2004	44	2004
Solution structural studies and low-resolution model of the Schizosaccharomyces pombe sap1 protein M Bada, D Walther, B Arcangioli, S Doniach, M Delarue Journal of molecular biology 300 (3), 563-574, 2000	42	2000
Mining biochemical information: lessons taught by the ribosome. M Whirl-Carrillo, IS Gabashvili, M Bada, DR Banatao, RB Altman Rna 8 (3), 279-289, 2002	37	2002
The Colorado Richly Annotated Full Text (CRAFT) corpus: Multi-model annotation in the biomedical domain KB Cohen, K Verspoor, K Fort, C Funk, M Bada, M Palmer, LE Hunter Handbook of Linguistic Annotation, 1379-1394, 2017	28	2017
Identification of OBO nonalignments and its implications for OBO enrichment M Bada, L Hunter Bioinformatics 24 (12), 1448-1455, 2008	28	2008
Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles KB Cohen, A Lanfranchi, MJ Choi, M Bada, WA Baumgartner, ... BMC bioinformatics 18 (1), 1-14, 2017	22	2017
An overview of the CRAFT concept annotation guidelines M Bada, M Eckert, M Palmer, L Hunter Proceedings of the Fourth Linguistic Annotation Workshop, 207-211, 2010	22	2010
Ribosomal dynamics inferred from variations in experimental measurements IS Gabashvili, M Whirl-Carrillo, M Bada, DR Banatao, RB Altman Rna 9 (11), 1301-1307, 2003	22	2003
Desiderata for ontologies to be used in semantic annotation of biomedical documents M Bada, L Hunter Journal of Biomedical Informatics 44 (1), 94-101, 2011	20	2011

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