Hedieh Torabifard
Hedieh Torabifard
Adresse e-mail validée de umich.edu
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Modeling molecular interactions in water: From pairwise to many-body potential energy functions
GA Cisneros, KT Wikfeldt, L Ojamäe, J Lu, Y Xu, H Torabifard, AP Bartok, ...
Chemical reviews 116 (13), 7501-7528, 2016
1732016
Tinker-HP: a massively parallel molecular dynamics package for multiscale simulations of large complex systems with advanced point dipole polarizable force fields
L Lagardère, LH Jolly, F Lipparini, F Aviat, B Stamm, ZF Jing, M Harger, ...
Chemical Science 9 (4), 956-972, 2018
562018
Development of AMOEBA force field for 1, 3-dimethylimidazolium based ionic liquids
ON Starovoytov, H Torabifard, GA Cisneros
The Journal of Physical Chemistry B 118 (25), 7156-7166, 2014
332014
Mutations along a TET2 active site scaffold stall oxidation at 5-hydroxymethylcytosine
MY Liu, H Torabifard, DJ Crawford, JE DeNizio, XJ Cao, BA Garcia, ...
Nature chemical biology 13 (2), 181, 2017
272017
Computational and experimental characterization of a pyrrolidinium-based ionic liquid for electrolyte applications
H Torabifard, L Reed, MT Berry, JE Hein, E Menke, GA Cisneros
The Journal of chemical physics 147 (16), 161731, 2017
152017
Development of an AMOEBA water model using GEM distributed multipoles
H Torabifard, ON Starovoytov, P Ren, GA Cisneros
Theoretical Chemistry Accounts 134 (8), 101, 2015
152015
Computational investigation of O 2 diffusion through an intra-molecular tunnel in AlkB; influence of polarization on O 2 transport
H Torabifard, GA Cisneros
Chemical science 8 (9), 6230-6238, 2017
112017
Mechanisms and kinetics of thiotepa and tepa hydrolysis: DFT study
H Torabifard, A Fattahi
Journal of molecular modeling 18 (8), 3563-3576, 2012
82012
DFT study on Thiotepa and Tepa interactions with their DNA receptor
H Torabifard, A Fattahi
Structural Chemistry 24 (1), 1-11, 2013
62013
Insight into wild-type and T1372E TET2-mediated 5hmC oxidation using ab initio QM/MM calculations
H Torabifard, GA Cisneros
Chemical science 9 (44), 8433-8445, 2018
42018
Thermochemical properties of some vinyl chloride-induced DNA lesions: detailed view from NBO & AIM analysis
ZA Tehrani, H Torabifard, A Fattahi
Structural Chemistry 23 (6), 1987-2001, 2012
32012
M2 amphipathic helices facilitate pH-dependent conformational transition in influenza A virus
H Torabifard, A Panahi, CL Brooks
Proceedings of the National Academy of Sciences 117 (7), 3583-3591, 2020
2020
PH DEPENDENCE ON BINDING AND RELEASE OF FOLATE BY FOLIC ACID RECEPTOR
T Paul, H Torabifard, J Vilseck, R Hayes, C Brooks
PROTEIN SCIENCE 28, 185-185, 2019
2019
Ph-Mediated Processes in the Integral Membrane Influenza a Proton Channel (AM2) Studied by Constant Ph Molecular Dynamics
H Torabifard, A Panahi, CL Brooks III
PROTEIN SCIENCE 27, 134-134, 2018
2018
Modeling of the pH-dependent process in the integral membrane influenza A proton channel (AM2) using constant pH molecular dynamics simulations
H Torabifard, A Panahi, C Brooks
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 255, 2018
2018
Insight on the role of an active site scaffold in TET2 required for the step-wise oxidation of 5-methylcytosine
H Torabifard, M Liu, R Kohli, G Cisneros
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 254, 2017
2017
Classical And Quantum Mechanical Simulations Of Condensed Systems And Biomolecules
H Torabifard
2017
Insights on TET2 activity for DNA demethylation from MD simulations
H Torabifard, MY Liu, R Kohli, G Cisneros
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016
2016
Development of AMOEBA for ionic liquids and applications for Li plus transport
H Torabifard, YJ Tu, O Starovoytov, R Duke, G Cisneros
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016
2016
Transferability of GEM distributed multipoles in AMOEBA for ionic liquids
H Torabifard, YJ Tu, G Cisneros
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016
2016
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