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Benjamin Istace
Benjamin Istace
Genoscope / CEA
Adresse e-mail validée de genoscope.cns.fr
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Genome evolution across 1,011 Saccharomyces cerevisiae isolates
J Peter, M De Chiara, A Friedrich, JX Yue, D Pflieger, A Bergström, ...
Nature 556 (7701), 339-344, 2018
8832018
Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps
C Belser, B Istace, E Denis, M Dubarry, FC Baurens, C Falentin, M Genete, ...
Nature plants 4 (11), 879-887, 2018
3492018
De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing
MHW Schmidt, A Vogel, AK Denton, B Istace, A Wormit, H van de Geest, ...
The Plant Cell 29 (10), 2336-2348, 2017
2152017
de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
B Istace, A Friedrich, L d'Agata, S Faye, E Payen, O Beluche, C Caradec, ...
Gigascience 6 (2), giw018, 2017
1542017
Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing
C Belser, FC Baurens, B Noel, G Martin, C Cruaud, B Istace, N Yahiaoui, ...
Communications biology 4 (1), 1047, 2021
1052021
Long-read assembly of the Brassica napus reference genome Darmor-bzh
M Rousseau-Gueutin, C Belser, C Da Silva, G Richard, B Istace, ...
GigaScience 9 (12), giaa137, 2020
692020
De novo assembly and annotation of three Leptosphaeria genomes using Oxford Nanopore MinION sequencing
F Dutreux, C Da Silva, L d’Agata, A Couloux, EJ Gay, B Istace, N Lapalu, ...
Scientific data 5 (1), 1-11, 2018
572018
Population genomics of apricots unravels domestication history and adaptive events
A Groppi, S Liu, A Cornille, S Decroocq, QT Bui, D Tricon, C Cruaud, ...
Nature Communications 12 (1), 3956, 2021
562021
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data
L Lima, C Marchet, S Caboche, C Da Silva, B Istace, JM Aury, H Touzet, ...
Briefings in bioinformatics 21 (4), 1164-1181, 2020
412020
Hapo-G, haplotype-aware polishing of genome assemblies with accurate reads
JM Aury, B Istace
NAR genomics and bioinformatics 3 (2), lqab034, 2021
402021
Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding
JM Aury, S Engelen, B Istace, C Monat, P Lasserre-Zuber, C Belser, ...
Gigascience 11, giac034, 2022
292022
Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp
S Farhat, P Le, E Kayal, B Noel, E Bigeard, E Corre, F Maumus, I Florent, ...
BMC biology 19, 1-21, 2021
272021
Two large reciprocal translocations characterized in the disease resistance-rich burmannica genetic group of Musa acuminata
M Dupouy, FC Baurens, P Derouault, C Hervouet, C Cardi, C Cruaud, ...
Annals of botany 124 (2), 319-329, 2019
192019
Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case
B Istace, C Belser, C Falentin, K Labadie, F Boideau, G Deniot, L Maillet, ...
Biology 10 (8), 732, 2021
162021
BiSCoT: improving large eukaryotic genome assemblies with optical maps
B Istace, C Belser, JM Aury
PeerJ 8, e10150, 2020
132020
Reconstructing the Gigabase Plant Genome of Solanum pennellii using Nanopore Sequencing
MHW Schmidt, A Vogel, AK Denton, B Istace, A Wormit, H van de Geest, ...
bioRxiv, 129148, 2017
102017
Chromosome-scale assembly of the yellow mealworm genome
E Eleftheriou, JM Aury, B Vacherie, B Istace, C Belser, B Noel, Y Moret, ...
Open Research Europe 1, 2021
92021
Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence
N Guérin, M Ciccarella, E Flamant, P Frémont, S Mangenot, B Istace, ...
Communications Biology 5 (1), 983, 2022
72022
Comparative assessment of long-read error-correction software applied to rna-sequencing data
L Lima, C Marchet, S Caboche, C Da Silva, B Istace, JM Aury, H Touzet, ...
BioRxiv, 476622, 2018
72018
Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection
A Canaguier, R Guilbaud, E Denis, G Magdelenat, C Belser, B Istace, ...
BMC genomics 23 (1), 317, 2022
62022
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