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erik ahrné
erik ahrné
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The quantitative and condition-dependent Escherichia coli proteome
A Schmidt, K Kochanowski, S Vedelaar, E Ahrné, B Volkmer, L Callipo, ...
Nature biotechnology 34 (1), 104-110, 2016
5372016
Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin …
T Glatter, C Ludwig, E Ahrné, R Aebersold, AJR Heck, A Schmidt
Journal of Proteome Research 11 (11), 5145-5156, 2012
2652012
Critical assessment of proteome‐wide label‐free absolute abundance estimation strategies
E Ahrné, L Molzahn, T Glatter, A Schmidt
Proteomics 13 (17), 2567-2578, 2013
1742013
Targeted combinatorial alternative splicing generates brain region-specific repertoires of neurexins
D Schreiner, TM Nguyen, G Russo, S Heber, A Patrignani, E Ahrné, ...
Neuron 84 (2), 386-398, 2014
1602014
Protein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates
A Riba, N Di Nanni, N Mittal, E Arhné, A Schmidt, M Zavolan
Proceedings of the national academy of sciences 116 (30), 15023-15032, 2019
1082019
Unrestricted identification of modified proteins using MS/MS
E Ahrné, M Müller, F Lisacek
Proteomics 10 (4), 671-686, 2010
962010
Evaluation and improvement of quantification accuracy in isobaric mass tag-based protein quantification experiments
E Ahrné, T Glatter, C Viganò, C Schubert, EA Nigg, A Schmidt
Journal of proteome research 15 (8), 2537-2547, 2016
922016
QuickMod: a tool for open modification spectrum library searches
E Ahrné, F Nikitin, F Lisacek, M Müller
Journal of proteome research 10 (7), 2913-2921, 2011
602011
Comparison of different sample preparation protocols reveals lysis buffer-specific extraction biases in gram-negative bacteria and human cells
T Glatter, E Ahrné, A Schmidt
Journal of Proteome Research 14 (11), 4472-4485, 2015
592015
Systems-level overview of host protein phosphorylation during Shigella flexneri infection revealed by phosphoproteomics
C Schmutz, E Ahrné, CA Kasper, T Tschon, I Sorg, RF Dreier, A Schmidt, ...
Molecular & Cellular Proteomics 12 (10), 2952-2968, 2013
592013
Quantitative isoform-profiling of highly diversified recognition molecules
D Schreiner, J Simicevic, E Ahrné, A Schmidt, P Scheiffele
Elife 4, e07794, 2015
532015
Evaluation of data-dependent and-independent mass spectrometric workflows for sensitive quantification of proteins and phosphorylation sites
M Bauer, E Ahrné, AP Baron, T Glatter, LL Fava, A Santamaria, EA Nigg, ...
Journal of proteome research 13 (12), 5973-5988, 2014
502014
A simple workflow to increase MS2 identification rate by subsequent spectral library search
E Ahrné, A Masselot, PA Binz, M Müller, F Lisacek
Proteomics 9 (6), 1731-1736, 2009
422009
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2016
392016
Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas
J Gunaratne, A Schmidt, A Quandt, SP Neo, ÖS Saraç, T Gracia, ...
Molecular & cellular proteomics 12 (6), 1741-1751, 2013
372013
Quantitative proteomic and phosphoproteomic comparison of human colon cancer DLD-1 cells differing in ploidy and chromosome stability
C Viganó, C von Schubert, E Ahrné, A Schmidt, T Lorber, L Bubendorf, ...
Molecular biology of the cell 29 (9), 1031-1047, 2018
332018
An improved method for the construction of decoy peptide MS/MS spectra suitable for the accurate estimation of false discovery rates
E Ahrné, Y Ohta, F Nikitin, A Scherl, F Lisacek, M Müller
Proteomics 11 (20), 4085-4095, 2011
272011
Capture compound mass spectrometry-a powerful tool to identify novel c-di-GMP effector proteins
BJ Laventie, J Nesper, E Ahrné, T Glatter, A Schmidt, U Jenal
JoVE (Journal of Visualized Experiments), e51404, 2015
202015
Deuterium induces a distinctive Escherichia coli proteome that correlates with the reduction in growth rate
C Opitz, E Ahrné, KN Goldie, A Schmidt, S Grzesiek
Journal of Biological Chemistry 294 (7), 2279-2292, 2019
142019
Global ion suppression limits the potential of mass spectrometry based phosphoproteomics
RF Dreier, E Ahrné, P Broz, A Schmidt
Journal of proteome research 18 (1), 493-507, 2018
142018
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