The zebrafish reference genome sequence and its relationship to the human genome K Howe, MD Clark, CF Torroja, J Torrance, C Berthelot, M Muffato, ... Nature 496 (7446), 498-503, 2013 | 5725 | 2013 |
The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates C Berthelot, F Brunet, D Chalopin, A Juanchich, M Bernard, B Noël, ... Nature communications 5 (1), 1-10, 2014 | 982 | 2014 |
Enhancer evolution across 20 mammalian species D Villar, C Berthelot, S Aldridge, TF Rayner, M Lukk, M Pignatelli, TJ Park, ... Cell 160 (3), 554-566, 2015 | 796 | 2015 |
An efficient multistrategy DNA decontamination procedure of PCR reagents for hypersensitive PCR applications S Champlot, C Berthelot, M Pruvost, EA Bennett, T Grange, EM Geigl PloS one 5 (9), e13042, 2010 | 353 | 2010 |
Chromosome evolution at the origin of the ancestral vertebrate genome C Sacerdot, A Louis, C Bon, C Berthelot, H Roest Crollius Genome biology 19, 1-15, 2018 | 193 | 2018 |
Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression C Berthelot, D Villar, JE Horvath, DT Odom, P Flicek Nature ecology & evolution 2 (1), 152-163, 2018 | 154 | 2018 |
The bowfin genome illuminates the developmental evolution of ray-finned fishes AW Thompson, MB Hawkins, E Parey, DJ Wcisel, T Ota, K Kawasaki, ... Nature Genetics 53 (9), 1373-1384, 2021 | 67 | 2021 |
The 3D organization of chromatin explains evolutionary fragile genomic regions C Berthelot, M Muffato, J Abecassis, HR Crollius Cell reports 10 (11), 1913-1924, 2015 | 66 | 2015 |
Evolution of gene expression after whole‐genome duplication: New insights from the spotted gar genome J Pasquier, I Braasch, P Batzel, C Cabau, J Montfort, T Nguyen, ... Journal of Experimental Zoology Part B: Molecular and Developmental …, 2017 | 64 | 2017 |
Genome structures resolve the early diversification of teleost fishes E Parey, A Louis, J Montfort, O Bouchez, C Roques, C Iampietro, J Lluch, ... Science 379 (6632), 572-575, 2023 | 46 | 2023 |
An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication E Parey, A Louis, J Montfort, Y Guiguen, HR Crollius, C Berthelot Genome Research, gr. 276953.122, 2022 | 44 | 2022 |
Adaptation of proteins to the cold in Antarctic fish: a role for methionine? C Berthelot, J Clarke, T Desvignes, H William Detrich III, P Flicek, LS Peck, ... Genome biology and evolution 11 (1), 220-231, 2019 | 39 | 2019 |
Synteny-guided resolution of gene trees clarifies the functional impact of whole-genome duplications E Parey, A Louis, C Cabau, Y Guiguen, H Roest Crollius, C Berthelot Molecular biology and evolution 37 (11), 3324-3337, 2020 | 36 | 2020 |
Reconstruction of hundreds of reference ancestral genomes across the eukaryotic kingdom M Muffato, A Louis, NTT Nguyen, J Lucas, C Berthelot, H Roest Crollius Nature Ecology & Evolution 7 (3), 355-366, 2023 | 34 | 2023 |
Classification of non-coding variants with high pathogenic impact L Moyon, C Berthelot, A Louis, NTT Nguyen, H Roest Crollius PLoS Genetics 18 (4), e1010191, 2022 | 25 | 2022 |
An integrated multi-tissue approach for endometriosis candidate biomarkers: a systematic review A Brulport, M Bourdon, D Vaiman, C Drouet, K Pocate-Cheriet, K Bouzid, ... Reproductive Biology and Endocrinology 22 (1), 21, 2024 | 13 | 2024 |
The rainbow trout genome, an important landmark for aquaculture and genome evolution J Bobe, L Marandel, S Panserat, P Boudinot, C Berthelot, E Quillet, ... Genomics in aquaculture, 21-43, 2016 | 13 | 2016 |
Phylogenetic modeling of enhancer shifts in African mole-rats reveals regulatory changes associated with tissue-specific traits E Parey, D Fernandez-Aroca, S Frost, A Uribarren, TJ Park, M Zöttl, ... Genome Research 33 (9), 1513-1526, 2023 | 3 | 2023 |
SCORPiOs, a Novel Method to Reconstruct Gene Phylogenies in the Context of a Known WGD Event E Parey, H Roest Crollius, C Berthelot Polyploidy: Methods and Protocols, 155-173, 2023 | 2 | 2023 |
Les duplications complètes du génome, une redondance à l’échelle du génome entier E PAREY, C BERTHELOT Fonction et évolution des séquences répétées dans les génomes, 13, 2024 | | 2024 |