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Andrew S Warren
Andrew S Warren
Research Assistant Professor at University of Virginia, Biocomplexity Institute & Initiative
Verified email at vt.edu - Homepage
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Cited by
Year
Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center
AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ...
Nucleic acids research 45 (D1), D535-D542, 2017
11962017
PATRIC, the bacterial bioinformatics database and analysis resource
AR Wattam, D Abraham, O Dalay, TL Disz, T Driscoll, JL Gabbard, ...
Nucleic acids research 42 (D1), D581-D591, 2014
11812014
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ...
Nucleic acids research 48 (D1), D606-D612, 2020
5222020
PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species
JJ Gillespie, AR Wattam, SA Cammer, JL Gabbard, MP Shukla, O Dalay, ...
Infection and immunity 79 (11), 4286-4298, 2011
3042011
Whole-genome sequencing provides new insights into the clonal architecture of Barrett's esophagus and esophageal adenocarcinoma
CS Ross-Innes, J Becq, A Warren, RK Cheetham, H Northen, ...
Nature genetics 47 (9), 1038-1046, 2015
2602015
A Draft Genome Sequence of Pseudomonas syringae pv. tomato T1 Reveals a Type III Effector Repertoire Significantly Divergent from That of Pseudomonas syringae pv …
NF Almeida, S Yan, M Lindeberg, DJ Studholme, DJ Schneider, ...
Molecular Plant-Microbe Interactions 22 (1), 52-62, 2009
1482009
A Draft Genome Sequence of Pseudomonas syringae pv. tomato T1 Reveals a Type III Effector Repertoire Significantly Divergent from That of Pseudomonas syringae pv …
NF Almeida, S Yan, M Lindeberg, DJ Studholme, DJ Schneider, ...
Molecular Plant-Microbe Interactions 22 (1), 52-62, 2009
1482009
Missing genes in the annotation of prokaryotic genomes
AS Warren, J Archuleta, W Feng, JC Setubal
BMC bioinformatics 11 (1), 1-12, 2010
982010
Assembly, annotation, and comparative genomics in PATRIC, the all bacterial bioinformatics resource center
AR Wattam, T Brettin, JJ Davis, S Gerdes, R Kenyon, D Machi, C Mao, ...
Comparative Genomics, 79-101, 2018
752018
PATRIC as a unique resource for studying antimicrobial resistance
DA Antonopoulos, R Assaf, RK Aziz, T Brettin, C Bun, N Conrad, JJ Davis, ...
Briefings in bioinformatics 20 (4), 1094-1102, 2019
742019
Critical Assessment of Metagenome Interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
582022
Database resources for the tuberculosis community
JM Lew, C Mao, M Shukla, A Warren, R Will, D Kuznetsov, I Xenarios, ...
Tuberculosis 93 (1), 12-17, 2013
412013
Evaluating the impact of international airline suspensions on the early global spread of COVID-19
A Adiga, S Venkatramanan, J Schlitt, A Peddireddy, A Dickerman, A Bura, ...
MedRxiv, 2020
272020
Functional bias in molecular evolution rate of Arabidopsis thaliana
AS Warren, R Anandakrishnan, L Zhang
BMC evolutionary biology 10 (1), 1-10, 2010
222010
The Genome Reverse Compiler: an explorative annotation tool
AS Warren, JC Setubal
BMC bioinformatics 10 (1), 1-17, 2009
182009
Enthalpy–entropy compensation in the transition of a monospecific antibody towards antigen-binding promiscuity
J Kang, AS Warren
Molecular immunology 44 (14), 3623-3624, 2007
182007
A draft genome sequence of Pseudomonas syringae pv. tomato strain T1 reveals a repertoire of Type III related genes significantly divergent from that of Pseudomonas syringae pv …
NF Almeida, S Yan, M Lindeberg, DJ Studholme, DJ Schneider, ...
Mol Plant-Microbe Interact 22, 52-62, 2009
152009
Whole exome sequencing to identify genetic variants associated with raised atherosclerotic lesions in young persons
JE Hixson, G Jun, LC Shimmin, Y Wang, G Yu, C Mao, AS Warren, ...
Scientific reports 7 (1), 1-9, 2017
142017
Evaluating the impact of international airline suspensions on COVID-19 direct importation risk
A Adiga, S Venkatramanan, A Peddireddy, A Telionis, A Dickerman, ...
medRxiv, 2020
132020
Efficient algorithms for generating provably near-optimal cluster descriptors for explainability
P Sambaturu, A Gupta, I Davidson, SS Ravi, A Vullikanti, A Warren
Proceedings of the AAAI Conference on Artificial Intelligence 34 (02), 1636-1643, 2020
122020
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