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Åsmund Flobak
Åsmund Flobak
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Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ...
Nature communications 10 (1), 1-17, 2019
1832019
Discovery of drug synergies in gastric cancer cells predicted by logical modeling
Å Flobak, A Baudot, E Remy, L Thommesen, D Thieffry, M Kuiper, ...
PLoS computational biology 11 (8), e1004426, 2015
1002015
The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms
S Tripathi, Å Flobak, K Chawla, A Baudot, T Bruland, L Thommesen, ...
BMC Systems Biology 9 (1), 1-15, 2015
512015
Tumor Targeting by αvβ3-Integrin-Specific Lipid Nanoparticles Occurs via Phagocyte Hitchhiking
AM Sofias, YC Toner, AE Meerwaldt, MMT van Leent, G Soultanidis, ...
ACS nano 14 (7), 7832-7846, 2020
312020
A high-throughput drug combination screen of targeted small molecule inhibitors in cancer cell lines
Å Flobak, B Niederdorfer, VT Nakstad, L Thommesen, G Klinkenberg, ...
Scientific data 6 (1), 1-10, 2019
222019
High-throughput screening reveals higher synergistic effect of MEK inhibitor combinations in colon cancer spheroids
E Folkesson, B Niederdorfer, VT Nakstad, L Thommesen, G Klinkenberg, ...
Scientific reports 10 (1), 1-14, 2020
182020
Network and systems medicine: Position paper of the european collaboration on science and technology action on open multiscale systems medicine
B Comte, J Baumbach, A Benis, J Basílio, N Debeljak, Å Flobak, ...
Network and systems medicine 3 (1), 67-90, 2020
152020
CImbinator: a web-based tool for drug synergy analysis in small-and large-scale datasets
Å Flobak, M Vazquez, A Lægreid, A Valencia
Bioinformatics 33 (15), 2410-2412, 2017
152017
The minimum information about a molecular interaction causal statement (MI2CAST)
V Touré, S Vercruysse, ML Acencio, RC Lovering, S Orchard, G Bradley, ...
Bioinformatics 36 (24), 5712-5718, 2020
142020
The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling
V Touré, Å Flobak, A Niarakis, S Vercruysse, M Kuiper
Briefings in Bioinformatics 22 (4), bbaa390, 2021
82021
A middle-out modeling strategy to extend a colon cancer logical model improves drug synergy predictions in epithelial-derived cancer cell lines
E Tsirvouli, V Touré, B Niederdorfer, M Vázquez, Å Flobak, M Kuiper
Frontiers in molecular biosciences 7, 502573, 2020
52020
Strategies to enhance logic modeling-based cell line-specific drug synergy prediction
B Niederdorfer, V Touré, M Vazquez, L Thommesen, M Kuiper, A Lægreid, ...
Frontiers in Physiology, 862, 2020
52020
Boolean function metrics can assist modelers to check and choose logical rules
J Zobolas, PT Monteiro, M Kuiper, Å Flobak
Journal of Theoretical Biology 538, 111025, 2022
22022
Improving public cancer care by implementing precision medicine in Norway: IMPRESS-Norway
Å Helland, HG Russnes, GL Fagereng, K Al-Shibli, Y Andersson, T Berg, ...
Journal of Translational Medicine 20 (1), 1-11, 2022
12022
A national precision cancer medicine implementation initiative for Norway
K Taskén, HEG Russnes, E Aas, L Bjørge, ES Blix, E Enerly, GL Fagereng, ...
Nature Medicine 28 (5), 885-887, 2022
12022
The status of causality in biological databases for logical modeling: data resources and data retrieval possibilities
V Touré, Å Flobak, A Niarakis, S Vercruysse, M Kuiper
Preprints, 2020
12020
Prototype precision oncology learning ecosystem: Norwegian precision cancer medicine implementation initiative.
K Tasken, H Russnes, A Helland, E Aas, L Bjørge, ES Blix, E Enerly, ...
Journal of Clinical Oncology 40 (16_suppl), e13634-e13634, 2022
2022
Logical modeling: Combining manual curation and automated parameterization to predict drug synergies
Å Flobak, J Zobolas, M Vazquez, TS Steigedal, L Thommesen, ...
bioRxiv, 2021
2021
Author Correction: High-throughput screening reveals higher synergistic effect of MEK inhibitor combinations in colon cancer spheroids
E Folkesson, B Niederdorfer, VT Nakstad, L Thommesen, G Klinkenberg, ...
Scientific Reports 10 (1), 1-2, 2020
2020
emba: R package for analysis and visualization of biomarkers in boolean model ensembles
J Zobolas, M Kuiper, Å Flobak
Journal of Open Source Software 5 (53), 2583, 2020
2020
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