| Structure, function and diversity of the healthy human microbiome C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ... nature 486 (7402), 207, 2012 | 6340 | 2012 |
| Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation S Koren, BP Walenz, K Berlin, JR Miller, NH Bergman, AM Phillippy Genome research 27 (5), 722-736, 2017 | 2389 | 2017 |
| A framework for human microbiome research BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ... nature 486 (7402), 215, 2012 | 1669 | 2012 |
| Assembly algorithms for next-generation sequencing data JR Miller, S Koren, G Sutton Genomics 95 (6), 315-327, 2010 | 1288 | 2010 |
| Hybrid error correction and de novo assembly of single-molecule sequencing reads S Koren, MC Schatz, BP Walenz, J Martin, JT Howard, G Ganapathy, ... Nature biotechnology 30 (7), 693-700, 2012 | 943 | 2012 |
| Nanopore sequencing and assembly of a human genome with ultra-long reads M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ... Nature biotechnology 36 (4), 338-345, 2018 | 911 | 2018 |
| Mash: fast genome and metagenome distance estimation using MinHash BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ... Genome biology 17 (1), 1-14, 2016 | 864 | 2016 |
| The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes TJ Treangen, BD Ondov, S Koren, AM Phillippy Genome biology 15 (11), 1-15, 2014 | 770 | 2014 |
| GAGE: A critical evaluation of genome assemblies and assembly algorithms SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ... Genome Research 22 (3), 557-567, 2012 | 737 | 2012 |
| Assembling large genomes with single-molecule sequencing and locality-sensitive hashing K Berlin, S Koren, CS Chin, JP Drake, JM Landolin, AM Phillippy Nature biotechnology 33 (6), 623-630, 2015 | 714 | 2015 |
| Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... GigaScience 2 (1), 2047-217X-2-10, 2013 | 631 | 2013 |
| Aggressive assembly of pyrosequencing reads with mates JR Miller, AL Delcher, S Koren, E Venter, BP Walenz, A Brownley, ... Bioinformatics 24 (24), 2818-2824, 2008 | 564 | 2008 |
| Assemblathon 1: A competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011 | 543 | 2011 |
| The bonobo genome compared with the chimpanzee and human genomes K Prüfer, K Munch, I Hellmann, K Akagi, JR Miller, B Walenz, S Koren, ... Nature 486 (7404), 527-531, 2012 | 490 | 2012 |
| Reducing assembly complexity of microbial genomes with single-molecule sequencing S Koren, GP Harhay, TPL Smith, JL Bono, DM Harhay, SD Mcvey, ... Genome biology 14 (9), 1-16, 2013 | 360 | 2013 |
| Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome DM Bickhart, BD Rosen, S Koren, BL Sayre, AR Hastie, S Chan, J Lee, ... Nature genetics 49 (4), 643-650, 2017 | 337 | 2017 |
| One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly S Koren, AM Phillippy Current opinion in microbiology 23, 110-120, 2015 | 333 | 2015 |
| Genomic insights into the Ixodes scapularis tick vector of Lyme disease M Gulia-Nuss, AB Nuss, JM Meyer, DE Sonenshine, RM Roe, ... Nature communications 7 (1), 1-13, 2016 | 310 | 2016 |
| Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly VA Schneider, T Graves-Lindsay, K Howe, N Bouk, HC Chen, PA Kitts, ... Genome research 27 (5), 849-864, 2017 | 287 | 2017 |
| Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ... Nature biotechnology 37 (10), 1155-1162, 2019 | 221* | 2019 |
Adam M. PhillippySr. Investigator, National Human Genome Research Institute, NIHVerified email at nih.gov
