David Berry
David Berry
Verified email at univie.ac.at - Homepage
Cited by
Cited by
Deciphering microbial interactions and detecting keystone species with co-occurrence networks
D Berry, S Widder
Frontiers in Microbiology 5, 219, 2014
Microbial ecology of drinking water distribution systems
D Berry, C Xi, L Raskin
Current opinion in biotechnology 17 (3), 297-302, 2006
Barcoded primers used in multiplex amplicon pyrosequencing bias amplification
D Berry, KB Mahfoudh, M Wagner, A Loy
Applied and environmental microbiology 77 (21), 7846-7849, 2011
High-fat diet alters gut microbiota physiology in mice
H Daniel, AM Gholami, D Berry, C Desmarchelier, H Hahne, G Loh, ...
The ISME journal 8 (2), 295-308, 2014
Temporal bacterial community dynamics vary among ulcerative colitis patients after fecal microbiota transplantation
S Angelberger, W Reinisch, A Makristathis, C Lichtenberger, C Dejaco, ...
American Journal of Gastroenterology 108 (10), 1620-1630, 2013
Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells
D Berry, E Mader, TK Lee, D Woebken, Y Wang, D Zhu, M Palatinszky, ...
Proceedings of the National Academy of Sciences 112 (2), E194-E203, 2015
Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis
D Berry, C Schwab, G Milinovich, J Reichert, KB Mahfoudh, T Decker, ...
The ISME journal 6 (11), 2091-2106, 2012
Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP
T Gutierrez, DR Singleton, D Berry, T Yang, MD Aitken, A Teske
The ISME journal 7 (11), 2091-2104, 2013
Pediatric obesity is associated with an altered gut microbiota and discordant shifts in Firmicutes populations
A Riva, F Borgo, C Lassandro, E Verduci, G Morace, E Borghi, D Berry
Environmental microbiology 19 (1), 95-105, 2017
NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite‐oxidizing Nitrospira
M Pester, F Maixner, D Berry, T Rattei, H Koch, S Lücker, B Nowka, ...
Environmental microbiology 16 (10), 3055-3071, 2014
Cyanate as an energy source for nitrifiers
M Palatinszky, C Herbold, N Jehmlich, M Pogoda, P Han, M von Bergen, ...
Nature 524 (7563), 105-108, 2015
Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium
S Brugiroux, M Beutler, C Pfann, D Garzetti, HJ Ruscheweyh, D Ring, ...
Nature microbiology 2 (2), 1-12, 2016
Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing
D Berry, B Stecher, A Schintlmeister, J Reichert, S Brugiroux, B Wild, ...
Proceedings of the National Academy of Sciences 110 (12), 4720-4725, 2013
Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery
C Schwab, D Berry, I Rauch, I Rennisch, J Ramesmayer, E Hainzl, ...
The ISME journal 8 (5), 1101-1114, 2014
Microbial nutrient niches in the gut
FC Pereira, D Berry
Environmental microbiology 19 (4), 1366-1378, 2017
Intestinal microbiota: a source of novel biomarkers in inflammatory bowel diseases?
D Berry, W Reinisch
Best practice & research Clinical gastroenterology 27 (1), 47-58, 2013
Role of bacterial exopolysaccharides (EPS) in the fate of the oil released during the Deepwater Horizon oil spill
T Gutierrez, D Berry, T Yang, S Mishamandani, L McKay, A Teske, ...
PloS one 8 (6), e67717, 2013
A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes
CW Herbold, C Pelikan, O Kuzyk, B Hausmann, R Angel, D Berry, A Loy
Frontiers in microbiology 6, 731, 2015
Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents
AL Müller, JR De Rezende, CRJ Hubert, KU Kjeldsen, I Lagkouvardos, ...
The ISME journal 8 (6), 1153-1165, 2014
Colonization resistance and microbial ecophysiology: using gnotobiotic mouse models and single-cell technology to explore the intestinal jungle
B Stecher, D Berry, A Loy
FEMS microbiology reviews 37 (5), 793-829, 2013
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