Eduardo Castro-Nallar
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Pathogen typing in the genomics era: MLST and the future of molecular epidemiology
M Pérez-Losada, P Cabezas, E Castro-Nallar, KA Crandall
Infection, Genetics and Evolution 16, 38-53, 2013
1892013
Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls
E Castro-Nallar, ML Bendall, M Pérez-Losada, S Sabuncyan, ...
PeerJ 3, e1140, 2015
1622015
PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples
C Hong, S Manimaran, Y Shen, JF Perez-Rogers, AL Byrd, ...
Microbiome 2 (1), 1-15, 2014
1312014
Pathoscope: species identification and strain attribution with unassembled sequencing data
OE Francis, M Bendall, S Manimaran, C Hong, NL Clement, ...
Genome research 23 (10), 1721-1729, 2013
1302013
The evolution of HIV: inferences using phylogenetics
E Castro-Nallar, M Pérez-Losada, GF Burton, KA Crandall
Molecular phylogenetics and evolution 62 (2), 777-792, 2012
1102012
Dual transcriptomic profiling of host and microbiota during health and disease in pediatric asthma
M Pérez-Losada, E Castro-Nallar, ML Bendall, RJ Freishtat, KA Crandall
PloS one 10 (6), e0131819, 2015
772015
Metataxonomic and metagenomic approaches vs. culture-based techniques for clinical pathology
SK Hilton, E Castro-Nallar, M Pérez-Losada, I Toma, TA McCaffrey, ...
Frontiers in microbiology 7, 484, 2016
622016
Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data
AL Byrd, JF Perez-Rogers, S Manimaran, E Castro-Nallar, I Toma, ...
BMC bioinformatics 15 (1), 1-14, 2014
622014
Phage cluster relationships identified through single gene analysis
KC Smith, E Castro-Nallar, JNB Fisher, DP Breakwell, JH Grose, ...
Bmc Genomics 14 (1), 1-16, 2013
562013
Single-molecule long-read 16S sequencing to characterize the lung microbiome from mechanically ventilated patients with suspected pneumonia
I Toma, MO Siegel, J Keiser, A Yakovleva, A Kim, L Davenport, J Devaney, ...
Journal of clinical microbiology 52 (11), 3913-3921, 2014
492014
Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities
E Castro-Nallar, Y Shen, RJ Freishtat, M Pérez-Losada, S Manimaran, ...
BMC medical genomics 8 (1), 1-9, 2015
472015
Redefining healthy urine: a cross-sectional exploratory metagenomic study of people with and without bladder dysfunction
SL Groah, M Pérez-Losada, L Caldovic, IH Ljungberg, BM Sprague, ...
The Journal of urology 196 (2), 579-587, 2016
412016
Population genomics and phylogeography of an Australian dairy factory derived lytic bacteriophage
E Castro-Nallar, H Chen, S Gladman, SC Moore, T Seemann, IB Powell, ...
Genome biology and evolution 4 (3), 382-393, 2012
402012
Androgen receptor gene CAG and GGN repeat polymorphisms in Chilean men with primary severe spermatogenic failure
E Castro‐Nallar, K Bacallao, A Parada‐Bustamante, MC Lardone, ...
Journal of andrology 31 (6), 552-559, 2010
402010
Microbial sequence typing in the genomic era
M Pérez-Losada, M Arenas, E Castro-Nallar
Infection, Genetics and Evolution 63, 346-359, 2018
332018
Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment
Nature Medicine, 1-11, 2020
31*2020
Cyclic AMP regulates bacterial persistence through repression of the oxidative stress response and SOS-dependent DNA repair in uropathogenic Escherichia coli
RC Molina-Quiroz, C Silva-Valenzuela, J Brewster, E Castro-Nallar, ...
MBio 9 (1), e02144-17, 2018
312018
Comparative genomics analysis of a new Exiguobacterium strain from Salar de Huasco reveals a repertoire of stress-related genes and arsenic resistance
J Castro-Severyn, F Remonsellez, SL Valenzuela, C Salinas, J Fortt, ...
Frontiers in microbiology 8, 456, 2017
222017
Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes
WJ Faison, A Rostovtsev, E Castro-Nallar, KA Crandall, K Chumakov, ...
Genomics 104 (1), 1-7, 2014
222014
The temporal dynamics of the tracheal microbiome in tracheostomised patients with and without lower respiratory infections
M Pérez-Losada, RJ Graham, M Coquillette, A Jafarey, E Castro-Nallar, ...
PloS one 12 (8), e0182520, 2017
202017
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