Adam M. Phillippy
Adam M. Phillippy
Sr. Investigator, National Human Genome Research Institute, NIH
Verified email at nih.gov - Homepage
Title
Cited by
Cited by
Year
Versatile and open software for comparing large genomes
S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, ...
Genome biology 5 (2), R12, 2004
39442004
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
S Koren, BP Walenz, K Berlin, JR Miller, NH Bergman, AM Phillippy
Genome research 27 (5), 722-736, 2017
21382017
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium
Nature 450 (7167), 203, 2007
19332007
Fast algorithms for large-scale genome alignment and comparison
AL Delcher, A Phillippy, J Carlton, SL Salzberg
Nucleic acids research 30 (11), 2478-2483, 2002
10062002
Hybrid error correction and de novo assembly of single-molecule sequencing reads
S Koren, MC Schatz, BP Walenz, J Martin, JT Howard, G Ganapathy, ...
Nature biotechnology 30 (7), 693-700, 2012
9302012
Interactive metagenomic visualization in a Web browser
BD Ondov, NH Bergman, AM Phillippy
BMC bioinformatics 12 (1), 385, 2011
9292011
Nanopore sequencing and assembly of a human genome with ultra-long reads
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...
Nature biotechnology 36 (4), 338-345, 2018
8092018
Mash: fast genome and metagenome distance estimation using MinHash
BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ...
Genome biology 17 (1), 132, 2016
7832016
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
TJ Treangen, BD Ondov, S Koren, AM Phillippy
Genome Biol 15 (11), 524, 2014
7302014
GAGE: A critical evaluation of genome assemblies and assembly algorithms
SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ...
Genome research 22 (3), 557-567, 2012
7182012
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
K Berlin, S Koren, CS Chin, JP Drake, JM Landolin, AM Phillippy
Nature biotechnology 33 (6), 623-630, 2015
6962015
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
GigaScience 2 (1), 2047-217X-2-10, 2013
6112013
Assemblathon 1: a competitive assessment of de novo short read assembly methods
D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ...
Genome research 21 (12), 2224-2241, 2011
5232011
Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes
R Seshadri, L Adrian, DE Fouts, JA Eisen, AM Phillippy, BA Methe, ...
Science 307 (5706), 105-108, 2005
4772005
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
C Jain, LM Rodriguez-R, AM Phillippy, KT Konstantinidis, S Aluru
Nature communications 9 (1), 1-8, 2018
4722018
Using MUMmer to identify similar regions in large sequence sets
AL Delcher, SL Salzberg, AM Phillippy
Current protocols in bioinformatics, 10.3. 1-10.3. 18, 2003
3902003
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99 A
SL Salzberg, DD Sommer, MC Schatz, AM Phillippy, PD Rabinowicz, ...
BMC genomics 9 (1), 1-16, 2008
3592008
Reducing assembly complexity of microbial genomes with single-molecule sequencing
S Koren, GP Harhay, TPL Smith, JL Bono, DM Harhay, SD Mcvey, ...
Genome biology 14 (9), R101, 2013
3522013
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
DM Bickhart, BD Rosen, S Koren, BL Sayre, AR Hastie, S Chan, J Lee, ...
Nature genetics 49 (4), 643-650, 2017
3192017
One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly
S Koren, AM Phillippy
Current opinion in microbiology 23, 110-120, 2015
3192015
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Articles 1–20