| Exome sequencing of hepatocellular carcinomas identifies new mutational signatures and potential therapeutic targets K Schulze, S Imbeaud, E Letouzé, LB Alexandrov, J Calderaro, ... Nature genetics 47 (5), 505-511, 2015 | 1279 | 2015 |
| Mutational signatures reveal the dynamic interplay of risk factors and cellular processes during liver tumorigenesis E Letouzé, J Shinde, V Renault, G Couchy, JF Blanc, E Tubacher, ... Nature communications 8 (1), 1-13, 2017 | 185 | 2017 |
| Mutational signature analysis identifies MUTYH deficiency in colorectal cancers and adrenocortical carcinomas C Pilati, J Shinde, LB Alexandrov, G Assié, T André, Z Hélias‐Rodzewicz, ... The Journal of pathology 242 (1), 10-15, 2017 | 120 | 2017 |
| Cyclin A2/E1 activation defines a hepatocellular carcinoma subclass with a rearrangement signature of replication stress Q Bayard, L Meunier, C Peneau, V Renault, J Shinde, JC Nault, I Mami, ... Nature Communications 9 (1), 1-14, 2018 | 98 | 2018 |
| Palimpsest: an R package for studying mutational and structural variant signatures along clonal evolution in cancer J Shinde, Q Bayard, S Imbeaud, TZ Hirsch, F Liu, V Renault, ... Bioinformatics 34 (19), 3380-3381, 2018 | 47 | 2018 |
| Imaging-AMARETTO: An imaging genomics software tool to interrogate multiomics networks for relevance to radiography and histopathology imaging biomarkers of clinical outcomes O Gevaert, M Nabian, S Bakr, C Everaert, J Shinde, A Manukyan, ... JCO clinical cancer informatics 4, 421-435, 2020 | 5 | 2020 |
| Introduction to AMARETTO J Shinde, C Everaert, S Bakr, M Nabian, J Xu, V Carey, N Pochet, ... | | 2019 |
| Introduction to Palimpsest J Shinde, Q Bayard, S Imbeaud, T Hirsch, F Liu, V Renault, ... | | 2018 |
| Exome sequencing of 243 liver tumors identifies new mutational signatures and potential therapeutic targets K Schulze, S Imbeaud, E Letouzé, LB Alexandrov, J Calderaro, ... Cancer Research 75 (15_Supplement), 2973-2973, 2015 | | 2015 |
| Imaging-AMARETTO: a software tool for imaging genomics in cancer O Gevaert, M Nabian, S Bakr, C Everaert, J Shinde, A Manukyan, ... | | |
| Intended for: Nature Communications C Pilati, J Shinde, LB Alexandrov, G Assie, T Andre, JF Emile, D LeCorre, ... | | |
