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Julian Parkhill
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A human gut microbial gene catalogue established by metagenomic sequencing
J Qin, R Li, J Raes, M Arumugam, KS Burgdorf, C Manichanh, T Nielsen, ...
nature 464 (7285), 59-65, 2010
104142010
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
ST Cole, R Brosch, J Parkhill, T Garnier, C Churcher, D Harris, SV Gordon, ...
Nature 396 (6707), 190-190, 1998
95361998
Enterotypes of the human gut microbiome
M Arumugam, J Raes, E Pelletier, D Le Paslier, T Yamada, DR Mende, ...
nature 473 (7346), 174-180, 2011
62782011
Complete genome sequence of the model actinomycete Streptomyces coelicolor A3 (2)
SD Bentley, KF Chater, AM Cerdeńo-Tárraga, GL Challis, NR Thomson, ...
Nature 417 (6885), 141-147, 2002
38232002
Richness of human gut microbiome correlates with metabolic markers
E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ...
Nature 500 (7464), 541-546, 2013
35412013
Artemis: sequence visualization and annotation
K Rutherford, J Parkhill, J Crook, T Horsnell, P Rice, MA Rajandream, ...
Bioinformatics 16 (10), 944-945, 2000
34662000
Roary: rapid large-scale prokaryote pan genome analysis
AJ Page, CA Cummins, M Hunt, VK Wong, S Reuter, MTG Holden, ...
Bioinformatics 31 (22), 3691-3693, 2015
24902015
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
SJ Salter, MJ Cox, EM Turek, ST Calus, WO Cookson, MF Moffatt, ...
BMC biology 12 (1), 1-12, 2014
23282014
The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences
J Parkhill, BW Wren, K Mungall, JM Ketley, C Churcher, D Basham, ...
Nature 403 (6770), 665-668, 2000
22462000
Massive gene decay in the leprosy bacillus
ST Cole, K Eiglmeier, J Parkhill, KD James, NR Thomson, PR Wheeler, ...
Nature 409 (6823), 1007-1011, 2001
20762001
ACT: the Artemis comparison tool
TJ Carver, KM Rutherford, M Berriman, MA Rajandream, BG Barrell, ...
Bioinformatics 21 (16), 3422-3423, 2005
16952005
Dominant and diet-responsive groups of bacteria within the human colonic microbiota
AW Walker, J Ince, SH Duncan, LM Webster, G Holtrop, X Ze, D Brown, ...
The ISME journal 5 (2), 220-230, 2011
15602011
Genome sequence of Yersinia pestis, the causative agent of plague
J Parkhill, BW Wren, NR Thomson, RW Titball, MTG Holden, MB Prentice, ...
Nature 413 (6855), 523-527, 2001
14822001
An integrated catalog of reference genes in the human gut microbiome
J Li, H Jia, X Cai, H Zhong, Q Feng, S Sunagawa, M Arumugam, ...
Nature biotechnology 32 (8), 834-841, 2014
14452014
Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18
J Parkhill, G Dougan, KD James, NR Thomson, D Pickard, J Wain, ...
Nature 413 (6858), 848-852, 2001
13992001
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
NJ Croucher, AJ Page, TR Connor, AJ Delaney, JA Keane, SD Bentley, ...
Nucleic acids research 43 (3), e15-e15, 2015
12822015
The minimum information about a genome sequence (MIGS) specification
D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ...
Nature biotechnology 26 (5), 541-547, 2008
12532008
The complete genome sequence of Mycobacterium bovis
T Garnier, K Eiglmeier, JC Camus, N Medina, H Mansoor, M Pryor, ...
Proceedings of the National Academy of Sciences 100 (13), 7877-7882, 2003
12032003
Evolution of MRSA during hospital transmission and intercontinental spread
SR Harris, EJ Feil, MTG Holden, MA Quail, EK Nickerson, N Chantratita, ...
Science 327 (5964), 469-474, 2010
11892010
The genome of the blood fluke Schistosoma mansoni
M Berriman, BJ Haas, PT LoVerde, RA Wilson, GP Dillon, GC Cerqueira, ...
Nature 460 (7253), 352-358, 2009
11272009
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