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Philipp Kapranov, PhD
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An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
118412012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
56772007
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
46832012
CD127 expression inversely correlates with FoxP3 and suppressive function of human CD4+ T reg cells
W Liu, AL Putnam, Z Xu-Yu, GL Szot, MR Lee, S Zhu, PA Gottlieb, ...
The Journal of experimental medicine 203 (7), 1701-1711, 2006
31742006
RNA maps reveal new RNA classes and a possible function for pervasive transcription
P Kapranov, J Cheng, S Dike, DA Nix, R Duttagupta, AT Willingham, ...
Science 316 (5830), 1484-1488, 2007
26332007
The ENCODE (ENCyclopedia of DNA elements) project
EA Feingold, L Pachter
Science 306 (5696), 636-640, 2004
20802004
The developmental transcriptome of Drosophila melanogaster
BR Graveley, AN Brooks, JW Carlson, MO Duff, JM Landolin, L Yang, ...
Nature 471 (7339), 473-479, 2011
15232011
Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
J Cheng, P Kapranov, J Drenkow, S Dike, S Brubaker, S Patel, J Long, ...
science 308 (5725), 1149-1154, 2005
14702005
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
S Cawley, S Bekiranov, HH Ng, P Kapranov, EA Sekinger, D Kampa, ...
Cell 116 (4), 499-509, 2004
14042004
Large-scale transcriptional activity in chromosomes 21 and 22
P Kapranov, SE Cawley, J Drenkow, S Bekiranov, RL Strausberg, ...
Science 296 (5569), 916-919, 2002
10122002
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ...
Science 330 (6012), 1787-1797, 2010
9802010
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells
WA Pastor, UJ Pape, Y Huang, HR Henderson, R Lister, M Ko, ...
Nature 473 (7347), 394-397, 2011
8692011
The Landscape of long noncoding RNA classification
GS Laurent, C Wahlestedt, P Kapranov
Trends in genetics 31 (5), 239-251, 2015
8612015
Genome-wide transcription and the implications for genomic organization
P Kapranov, AT Willingham, TR Gingeras
Nature Reviews Genetics 8 (6), 413-423, 2007
7932007
Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22
D Kampa, J Cheng, P Kapranov, M Yamanaka, S Brubaker, S Cawley, ...
Genome research 14 (3), 331-342, 2004
6512004
Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays
P Kapranov, J Drenkow, J Cheng, J Long, G Helt, S Dike, TR Gingeras
Genome research 15 (7), 987-997, 2005
4492005
Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation
F Ozsolak, P Kapranov, S Foissac, SW Kim, E Fishilevich, AP Monaghan, ...
Cell 143 (6), 1018-1029, 2010
4242010
A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster
X Zhang, Z Lian, C Padden, MB Gerstein, J Rozowsky, M Snyder, ...
Blood, The Journal of the American Society of Hematology 113 (11), 2526-2534, 2009
3512009
Microarray-based DNA methylation profiling: technology and applications
A Schumacher, P Kapranov, Z Kaminsky, J Flanagan, A Assadzadeh, ...
Nucleic acids research 34 (2), 528-542, 2006
3402006
The majority of total nuclear-encoded non-ribosomal RNA in a human cell is' dark matter'un-annotated RNA
P Kapranov, G St Laurent, T Raz, F Ozsolak, CP Reynolds, ...
BMC biology 8 (1), 1-15, 2010
2992010
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