| Transcriptome analysis in whole blood reveals increased microbial 1 diversity in schizophrenia LMO Loohuis, S Mangul, A Ori, G Jospin, D Koslicki, HT Yang, T Wu, ... bioRxiv, 057570, 2018 | 110* | 2018 |
| Technology dictates algorithms: recent developments in read alignment M Alser, J Rotman, D Deshpande, K Taraszka, H Shi, PI Baykal, HT Yang, ... Genome biology 22 (1), 249, 2021 | 106 | 2021 |
| Pathway-guided analysis identifies Myc-dependent alternative pre-mRNA splicing in aggressive prostate cancers JW Phillips, Y Pan, BL Tsai, Z Xie, L Demirdjian, W Xiao, HT Yang, ... Proceedings of the National Academy of Sciences 117 (10), 5269-5279, 2020 | 53 | 2020 |
| Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing I Mandric, J Rotman, HT Yang, N Strauli, DJ Montoya, W Van Der Wey, ... Nature communications 11 (1), 3126, 2020 | 51 | 2020 |
| ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues S Mangul, HT Yang, N Strauli, F Gruhl, HT Porath, K Hsieh, L Chen, ... Genome biology 19, 1-12, 2018 | 51 | 2018 |
| Benchmarking of computational error-correction methods for next-generation sequencing data K Mitchell, JJ Brito, I Mandric, Q Wu, S Knyazev, S Chang, LS Martin, ... Genome biology 21, 1-13, 2020 | 42 | 2020 |
| Regional Variation of Splicing QTLs in Human Brain Y Zhang, HT Yang, K Kadash-Edmondson, Y Pan, Z Pan, BL Davidson, ... The American Journal of Human Genetics 107 (2), 196-210, 2020 | 35 | 2020 |
| RNA-seq data science: From raw data to effective interpretation D Deshpande, K Chhugani, Y Chang, A Karlsberg, C Loeffler, J Zhang, ... Frontiers in Genetics 14, 997383, 2023 | 24 | 2023 |
| IRIS: Discovery of cancer immunotherapy targets arising from pre-mRNA alternative splicing Y Pan, JW Phillips, BD Zhang, M Noguchi, E Kutschera, J McLaughlin, ... Proceedings of the National Academy of Sciences 120 (21), e2221116120, 2023 | 11 | 2023 |
| HapIso: an accurate method for the haplotype-specific isoforms reconstruction from long single-molecule reads S Mangul, TH Yang, F Hormozdiari, AM Dainis, E Tseng, EA Ashley, ... IEEE Transactions on NanoBioscience 16 (2), 108-115, 2017 | 8 | 2017 |
| The RNA-binding proteins hnRNP H and F regulate splicing of a MYC-dependent HRAS exon in prostate cancer cells X Chen, HT Yang, B Zhang, JW Phillips, D Cheng, F Rigo, ON Witte, ... Proceedings of the National Academy of Sciences 120 (28), e2220190120, 2023 | 5 | 2023 |
| Profiling adaptive immune repertoires across multiple human tissues by RNA Sequencing S Mangul, M Igor, H Taegyun Yang, N Strauli, D Montoya, J Rotman, ... bioRxiv, 089235, 2016 | 5 | 2016 |
| Dumpster diving in RNA-sequencing to find the source of every last read S Mangul, HT Yang, N Strauli, F Gruhl, T Daley, S Christenson, ... bioRxiv 53041 (2016), 2016 | 5* | 2016 |
| IRIS: Big data-informed discovery of cancer immunotherapy targets arising from pre-mRNA alternative splicing Y Pan, AH Lee, HT Yang, Y Wang, Y Xu, KE Kadash-Edmondson, ... bioRxiv, 843268, 2019 | 2 | 2019 |
| Contact and Symplectic Topology F Bourgeois, V Colin, A Stipsicz Springer Science & Business Media, 2014 | 2 | 2014 |
| A general synthesis of benzoazepinoindoles–a new class of heterocycles JC Dobrowolski, DHT Nguyen, BH Fraser, M Bhadbhade, DSC Black, ... Synlett 30 (18), 2081-2085, 2019 | 1 | 2019 |
| Hidden treasures in contemporary RNA sequencing S Mangul, HT Yang, E Eskin, N Zaitlen, S Mangul, HT Yang, E Eskin, ... Hidden Treasures in Contemporary RNA Sequencing, 1-93, 2019 | 1 | 2019 |
| Bioinformatics Research and Applications A Bourgeois, P Skums, X Wan, A Zelikovsky | | |
