Ryan Leo Elworth
Ryan Leo Elworth
Postdoctoral Scientist, Rice University
Adresse e-mail validée de rice.edu
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Advances in computational methods for phylogenetic networks in the presence of hybridization
RAL Elworth, HA Ogilvie, J Zhu, L Nakhleh
Bioinformatics and Phylogenetics, 317-360, 2019
322019
Comprehensive Multi-omics Analysis Reveals Mitochondrial Stress as a Central Biological Hub for Spaceflight Impact
WA da Silveira, H Fazelinia, SB Rosenthal, EC Laiakis, MS Kim, ...
Cell 183 (5), 1185-1201. e20, 2020
212020
Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission
N Sapoval, M Mahmoud, MD Jochum, Y Liu, RAL Elworth, Q Wang, ...
BioRxiv, 2020
132020
The essential role of hypermutation in rapid adaptation to antibiotic stress
HH Mehta, AG Prater, K Beabout, RAL Elworth, M Karavis, HS Gibbons, ...
Antimicrobial agents and chemotherapy 63 (7), e00744-19, 2019
132019
DGEN: A Test Statistic for Detection of General Introgression Scenarios
RAL Elworth, C Allen, T Benedict, P Dulworth, L Nakhleh
18th International Workshop on Algorithms in Bioinformatics (WABI 2018) 113 …, 2018
112018
Pathogenic Nocardia cyriacigeorgica and Nocardia nova evolve to resist trimethoprim-sulfamethoxazole by both expected and unexpected pathways
H Mehta, J Weng, A Prater, RAL Elworth, X Han, Y Shamoo
Antimicrobial agents and chemotherapy 62 (7), e00364-18, 2018
102018
To Petabytes and beyond: recent advances in probabilistic and signal processing algorithms and their application to metagenomics
RAL Elworth, Q Wang, PK Kota, CJ Barberan, B Coleman, A Balaji, ...
Nucleic acids research 48 (10), 5217-5234, 2020
82020
SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission
N Sapoval, M Mahmoud, MD Jochum, Y Liu, RAL Elworth, Q Wang, ...
Genome research 31 (4), 635-644, 2021
72021
Synthetic DNA and biosecurity: Nuances of predicting pathogenicity and the impetus for novel computational approaches for screening oligonucleotides
RAL Elworth, C Diaz, J Yang, P de Figueiredo, K Ternus, T Treangen
PLoS Pathogens 16 (8), e1008649, 2020
32020
SeqScreen: a biocuration platform for robust taxonomic and biological process characterization of nucleic acid sequences of interest
D Albin, D Nasko, RAL Elworth, J Lu, A Balaji, C Diaz, N Shah, J Selengut, ...
2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2019
32019
Diversified race sampling on data streams applied to metagenomic sequence analysis. bioRxiv
BG Benjamin Coleman, L Chou, RAL Elworth, TJ Treangen, ...
32019
ALPHA: A toolkit for automated local phylogenomic analyses
RAL Elworth, C Allen, T Benedict, P Dulworth, L Nakhleh
Bioinformatics 34 (16), 2848-2850, 2018
32018
Faster pan-genome construction for efficient differentiation of naturally occurring and engineered plasmids with plaster
Q Wang, RA Elworth, TR Liu, TJ Treangen
19th International Workshop on Algorithms in Bioinformatics (WABI 2019), 2019
22019
PlasmidHawk: Alignment-based Lab-of-Origin Prediction of Synthetic Plasmids
Q Wang, TR Liu, RAL Elworth, T Treangen
BioRxiv, 2020
12020
Sub-linear sequence search via a Repeated And Merged Bloom Filter (RAMBO): indexing 170 TB data in 14 hours
G Gupta, M Yan, B Coleman, RA Elworth, T Treangen, A Shrivastava
arXiv preprint arXiv:1910.04358, 2019
12019
Diversified RACE sampling on data streams applied to metagenomic sequence analysis
B Coleman, B Geordie, L Chou, RAL Elworth, TJ Treangen, A Shrivastava
bioRxiv, 852889, 2019
12019
Inferring Local Genealogies on Closely Related Genomes
RAL Elworth, L Nakhleh
RECOMB International Workshop on Comparative Genomics, 213-231, 2017
12017
PlasmidHawk improves lab of origin prediction of engineered plasmids using sequence alignment
Q Wang, B Kille, TR Liu, RAL Elworth, TJ Treangen
Nature communications 12 (1), 1-12, 2021
2021
Squeegee: de-novo identification of reagent and laboratory induced microbial contaminants in low biomass microbiomes
Y Liu, RAL Elworth, MD Jochum, KM Aagaard, TJ Treangen
bioRxiv, 2021
2021
SeqScreen: Accurate and Sensitive Functional Screening of Pathogenic Sequences via Ensemble Learning
A Balaji, B Kille, A Kappell, GD Godbold, M Diep, RAL Elworth, Z Qian, ...
bioRxiv, 2021
2021
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