Annie Chateau
Annie Chateau
Maître de conférences, Université de Montpellier
Adresse e-mail validée de lirmm.fr
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Reconstructing ancestral gene orders using conserved intervals
A Bergeron, M Blanchette, A Chateau, C Chauve
International Workshop on Algorithms in Bioinformatics, 14-25, 2004
682004
Inferring synteny between genome assemblies: a systematic evaluation
D Liu, M Hunt, IJ Tsai
BMC bioinformatics 19 (1), 1-13, 2018
62*2018
An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies
R Blanc-Mathieu, B Verhelst, E Derelle, S Rombauts, FY Bouget, I Carré, ...
BMC genomics 15 (1), 1-12, 2014
552014
Exact approaches for scaffolding
M Weller, A Chateau, R Giroudeau
BMC bioinformatics 16 (S14), S2, 2015
242015
A complexity and approximation framework for the maximization scaffolding problem
A Chateau, R Giroudeau
Theoretical Computer Science 595, 92-106, 2015
232015
A CSP approach for metamodel instantiation
A Ferdjoukh, AE Baert, A Chateau, R Coletta, C Nebut
2013 IEEE 25th International Conference on Tools with Artificial …, 2013
212013
Instantiation of Meta-models Constrained with OCL: a CSP Approach
A Ferdjoukh, A Baert, E Bourreau, A Chateau, R Coletta, C Nebut
2015 3rd International Conference on Model-Driven Engineering and Software …, 2015
192015
Inferring positional homologs with common intervals of sequences
G Blin, A Chateau, C Chauve, Y Gingras
RECOMB Workshop on Comparative Genomics, 24-38, 2006
182006
Ancestral gene synteny reconstruction improves extant species scaffolding
Y Anselmetti, V Berry, C Chauve, A Chateau, E Tannier, S Bérard
BMC genomics 16 (S10), S11, 2015
172015
Computation of perfect DCJ rearrangement scenarios with linear and circular chromosomes
S Bérard, A Chateau, C Chauve, C Paul, E Tannier
Journal of Computational Biology 16 (10), 1287-1309, 2009
172009
Complexity and Polynomial-Time Approximation Algorithms around the Scaffolding Problem
A Chateau, R Giroudeau
These proceedings contain the papers that were presented at the First …, 2014
122014
On the complexity of scaffolding problems: from cliques to sparse graphs
M Weller, A Chateau, R Giroudeau
Combinatorial Optimization and Applications, 409-423, 2015
92015
An Integer Linear Programming Approach for Genome Scaffolding
N Briot, A Chateau, R Coletta, S de Givry, P Leleux, T Schiex
92014
Aligning the unalignable: bacteriophage whole genome alignments
S Bérard, A Chateau, N Pompidor, P Guertin, A Bergeron, KM Swenson
BMC bioinformatics 17 (1), 1-13, 2016
82016
Perfect DCJ rearrangement
S Bérard, A Chateau, C Chauve, C Paul, E Tannier
RECOMB International Workshop on Comparative Genomics, 158-169, 2008
82008
Scaffolding problems revisited: complexity, approximation and fixed parameter tractable algorithms, and some special cases
M Weller, A Chateau, C Dallard, R Giroudeau
Algorithmica 80 (6), 1771-1803, 2018
72018
A model-driven approach to generate relevant and realistic datasets
A Ferdjoukh, E Bourreau, A Chateau, C Nebut
SEKE: Software Engineering and Knowledge Engineering, 105-109, 2016
72016
On the linearization of scaffolds sharing repeated contigs
M Weller, A Chateau, R Giroudeau
International Conference on Combinatorial Optimization and Applications, 509-517, 2017
62017
Exploring Genome Rearrangements using Virtual Hybridization
M Belcaid, A Bergeron, A Chateau, C Chauve, Y Gingras, G Poisson, ...
APBC 2007, 205-214, 2007
62007
Machine learning meets genome assembly
K Padovani de Souza, JC Setubal, AC Ponce de Leon F. de Carvalho, ...
Briefings in Bioinformatics 20 (6), 2116-2129, 2019
52019
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