Julie Ferreira de Carvalho
Julie Ferreira de Carvalho
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The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights …
GE Martin, M Rousseau-Gueutin, S Cordonnier, O Lima, ...
Annals of botany 113 (7), 1197-1210, 2014
Long-read assembly of the Brassica napus reference genome Darmor-bzh
M Rousseau-Gueutin, C Belser, C Da Silva, G Richard, B Istace, ...
GigaScience 9 (12), giaa137, 2020
Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae)
J Ferreira de Carvalho, J Poulain, C Da Silva, P Wincker, ...
Heredity 110 (2), 181-193, 2013
Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole‐genome duplications in Brassica
J Ferreira de Carvalho, J Lucas, G Deniot, C Falentin, O Filangi, M Gilet, ...
The Plant Journal 98 (3), 434-447, 2019
Small RNAs reflect grandparental environments in apomictic dandelion
L Morgado, V Preite, C Oplaat, S Anava, J Ferreira de Carvalho, ...
Molecular Biology and Evolution 34 (8), 2035-2040, 2017
Recent and dynamic transposable elements contribute to genomic divergence under asexuality
J Ferreira de Carvalho, V de Jager, TP van Gurp, NCAM Wagemaker, ...
BMC genomics 17, 1-12, 2016
Heritable gene expression differences between apomictic clone members in Taraxacum officinale: Insights into early stages of evolutionary divergence in asexual …
J Ferreira de Carvalho, C Oplaat, N Pappas, M Derks, D de Ridder, ...
BMC genomics 17, 1-13, 2016
Haplotype Detection from Next-Generation Sequencing in High-Ploidy-Level Species: 45S rDNA Gene Copies in the Hexaploid Spartina maritima
J Boutte, B Aliaga, O Lima, J Ferreira de Carvalho, A Ainouche, J Macas, ...
G3: Genes, Genomes, Genetics 6 (1), 29-40, 2016
Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa
J Boutte, L Maillet, T Chaussepied, S Letort, JM Aury, C Belser, F Boideau, ...
Frontiers in plant science 11, 577536, 2020
Intergenerational environmental effects: functional signals in offspring transcriptomes and metabolomes after parental jasmonic acid treatment in apomictic dandelion
KJF Verhoeven, EH Verbon, TP van Gurp, C Oplaat, ...
new phytologist 217 (2), 871-882, 2018
Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae)
J Boutte, J Ferreira de Carvalho, M Rousseau-Gueutin, J Poulain, ...
Genome Biology and Evolution 8 (9), 3030-3044, 2016
Untangling structural factors driving genome stabilization in nascent Brassica napus allopolyploids
J Ferreira de Carvalho, S Stoeckel, F Eber, M Lodé‐Taburel, MM Gilet, ...
New Phytologist 230 (5), 2072-2084, 2021
Epigenomic and structural events preclude recombination in Brassica napus
F Boideau, G Richard, O Coriton, V Huteau, C Belser, G Deniot, F Eber, ...
New Phytologist 234 (2), 545-559, 2022
Chapter The Intertwined Chloroplast and Nuclear Genome Coevolution in Plants
M Rousseau-Gueutin, G Martin, J Ferreira de Carvalho, J Keller, ...
InTechOpen, 2018
Gene expression variation in natural populations of hexaploid and allododecaploid Spartina species (Poaceae)
J Ferreira de Carvalho, J Boutte, P Bourdaud, H Chelaifa, K Ainouche, ...
Plant Systematics and Evolution 303, 1061-1079, 2017
Persistence, dispersal and genetic evolution of recently formed Spartina homoploid hybrids and allopolyploids in Southern England
D Huska, IJ Leitch, JF de Carvalho, AR Leitch, A Salmon, M Ainouche, ...
Biological Invasions 18, 2137-2151, 2016
Exploring the genome of the salt-marsh Spartina maritima (Poaceae, Chloridoideae) through BAC end sequence analysis
J Ferreira de Carvalho, H Chelaifa, J Boutte, J Poulain, A Couloux, ...
Plant molecular biology 83, 591-606, 2013
Transcriptome response of the foundation plant Spartina alterniflora to the Deepwater Horizon oil spill
M Alvarez, J Ferreira de Carvalho, A Salmon, ML Ainouche, ...
Molecular ecology 27 (14), 2986-3000, 2018
Impact of whole genome triplication on the evolutionary history and the functional dynamics of regulatory genes involved in Brassica self-incompatibility signalling …
T Azibi, H Hadj-Arab, M Lodé, J Ferreira de Carvalho, G Trotoux, S Negre, ...
Plant reproduction 33, 43-58, 2020
The relative roles of local climate adaptation and phylogeny in determining leaf-out timing of temperate tree species
E Desnoues, J Ferreira de Carvalho, CM Zohner, TW Crowther
Forest Ecosystems 4, 1-7, 2017
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