Ramanathan Sowdhamini
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Knowledge-based protein modeling
MS Johnson, N Srinivasan, R Sowdhamini, TL Blundell
Critical reviews in biochemistry and molecular biology 29 (1), 1-68, 1994
3091994
Molecular evolution and domain structure of plasminogen‐related growth factors (HGF/SF and HGF1/MSP)
LE Donate, N Srinivasan, R Sowdhamini, E Gherardi, TL Blundell, ...
Protein Science 3 (12), 2378-2394, 1994
2141994
Stereochemical modeling of disulfide bridges. Criteria for introduction into proteins by site-directed mutagenesis
R Sowdhamini, N Srinivasan, B Shoichet, DV Santi, C Ramakrishnan, ...
Protein Engineering, Design and Selection 3 (2), 95-103, 1989
2051989
Conformations of disulfide bridges in proteins
N Srinivasan, R Sowdhamini, C Ramakrishnan, P Balaram
International journal of peptide and protein research 36 (2), 147-155, 1990
1971990
Cross genome comparisons of serine proteases in Arabidopsis and rice
LP Tripathi, R Sowdhamini
BMC genomics 7 (1), 200, 2006
1392006
Nanoscale organization of hedgehog is essential for long-range signaling
N Vyas, D Goswami, A Manonmani, P Sharma, HA Ranganath, ...
Cell 133 (7), 1214-1227, 2008
1362008
An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins
R Sowdhamini, TL Blundell
Protein Science 4 (3), 506-520, 1995
1131995
STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and …
M Naika, K Shameer, OK Mathew, R Gowda, R Sowdhamini
Plant and Cell Physiology 54 (2), e8-e8, 2013
1102013
CAMPASS: a database of structurally aligned protein superfamilies
R Sowdhamini, DF Burke, J Huang, K Mizuguchi, HA Nagarajaram, ...
Structure 6 (9), 1087-1094, 1998
931998
A database of globular protein structural domains: clustering of representative family members into similar folds
R Sowdhamini, SD Rufino, TL Blundell
Folding and Design 1 (3), 209-220, 1996
901996
STIFDB—Arabidopsis stress responsive transcription factor dataBase
K Shameer, S Ambika, SM Varghese, N Karaba, M Udayakumar, ...
International journal of plant genomics 2009, 2009
862009
100 ns molecular dynamics simulations to study intramolecular conformational changes in Bax
C Koshy, M Parthiban, R Sowdhamini
Journal of Biomolecular Structure and Dynamics 28 (1), 71-83, 2010
702010
Localization of functional domains of the mitogenic toxin of Pasteurella multocida
GD Pullinger, R Sowdhamini, AJ Lax
Infection and immunity 69 (12), 7839-7850, 2001
682001
Prediction of functional sites in proteins using conserved functional group analysis
CA Innis, AP Anand, R Sowdhamini
Journal of molecular biology 337 (4), 1053-1068, 2004
662004
Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties
AK Upadhyay, AR Chacko, A Gandhimathi, P Ghosh, K Harini, AP Joseph, ...
BMC plant biology 15 (1), 212, 2015
612015
Comparative Genomics of Odorant Binding Proteins in Anopheles gambiae, Aedes aegypti, and Culex quinquefasciatus
M Manoharan, M Ng Fuk Chong, A Vaïtinadapoulé, E Frumence, ...
Genome biology and evolution 5 (1), 163-180, 2013
602013
Genome-wide survey of prokaryotic serine proteases: analysis of distribution and domain architectures of five serine protease families in prokaryotes
LP Tripathi, R Sowdhamini
BMC genomics 9 (1), 549, 2008
582008
Molecular recognition in protein families: a database of aligned three-dimensional structures of related proteins
JP Overington, ZY Zhu, A Šali, MS Johnson, R Sowdhamini, GV Louie, ...
Biochemical Society transactions 21 (3), 597-604, 1993
581993
Structural and functional insights on the Myosin superfamily
DP Syamaladevi, JA Spudich, R Sowdhamini
Bioinformatics and biology insights 6, BBI. S8451, 2012
562012
Cross genome phylogenetic analysis of human and Drosophila G protein-coupled receptors: application to functional annotation of orphan receptors
RPR Metpally, R Sowdhamini
BMC genomics 6 (1), 106, 2005
562005
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