Gabriel Moreno-Hagelsieb
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Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end Illumina reads
AK Bartram, MDJ Lynch, JC Stearns, G Moreno-Hagelsieb, JD Neufeld
Applied and environmental microbiology 77 (11), 3846-3852, 2011
7482011
Plant growth-promoting bacterial endophytes
G Santoyo, G Moreno-Hagelsieb, M del Carmen Orozco-Mosqueda, ...
Microbiological research 183, 92-99, 2016
7412016
The transporter classification database (TCDB): recent advances
MH Saier Jr, VS Reddy, BV Tsu, MS Ahmed, C Li, G Moreno-Hagelsieb
Nucleic acids research 44 (D1), D372-D379, 2016
4512016
Operons in Escherichia coli: genomic analyses and predictions
H Salgado, G Moreno-Hagelsieb, TF Smith, J Collado-Vides
Proceedings of the National Academy of Sciences 97 (12), 6652-6657, 2000
4482000
Choosing BLAST options for better detection of orthologs as reciprocal best hits
G Moreno-Hagelsieb, K Latimer
Bioinformatics 24 (3), 319-324, 2008
4352008
The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons
V González, RI Santamaría, P Bustos, I Hernández-González, ...
Proceedings of the National Academy of Sciences 103 (10), 3834-3839, 2006
3922006
Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins
P Hu, SC Janga, M Babu, JJ Díaz-Mejía, G Butland, W Yang, O Pogoutse, ...
PLoS biol 7 (4), e1000096, 2009
3652009
Bacterial biogeography of the human digestive tract
JC Stearns, MDJ Lynch, DB Senadheera, HC Tenenbaum, MB Goldberg, ...
Scientific reports 1 (1), 1-9, 2011
3472011
Association of host genome with intestinal microbial composition in a large healthy cohort
W Turpin, O Espin-Garcia, W Xu, MS Silverberg, D Kevans, MI Smith, ...
Nature genetics 48 (11), 1413, 2016
2842016
eSGA: E. coli synthetic genetic array analysis
G Butland, M Babu, JJ Díaz-Mejía, F Bohdana, S Phanse, B Gold, W Yang, ...
Nature methods 5 (9), 789-795, 2008
2542008
A powerful non-homology method for the prediction of operons in prokaryotes
G Moreno-Hagelsieb, J Collado-Vides
Bioinformatics 18 (suppl_1), S329-S336, 2002
2472002
Evaluating bias of Illumina-based bacterial 16S rRNA gene profiles
K Kennedy, MW Hall, MDJ Lynch, G Moreno-Hagelsieb, JD Neufeld
Applied and environmental microbiology 80 (18), 5717-5722, 2014
2022014
Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics
LD Alcaraz, G Moreno-Hagelsieb, LE Eguiarte, V Souza, ...
BMC genomics 11 (1), 1-17, 2010
1872010
The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments
V González, P Bustos, MA Ramírez-Romero, A Medrano-Soto, H Salgado, ...
Genome biology 4 (6), 1-13, 2003
1632003
A comparative genomics approach to prediction of new members of regulons
K Tan, G Moreno-Hagelsieb, J Collado-Vides, GD Stormo
Genome research 11 (4), 566-584, 2001
1472001
Whole-genome expression profiling defines the HrpL regulon of Pseudomonas syringae pv. tomato DC3000, allows de novo reconstruction of the Hrp cis element, and identifies novel …
AO Ferreira, CR Myers, JS Gordon, GB Martin, M Vencato, A Collmer, ...
Molecular Plant-Microbe Interactions 19 (11), 1167-1179, 2006
1242006
Quickly finding orthologs as reciprocal best hits with BLAT, LAST, and UBLAST: how much do we miss?
N Ward, G Moreno-Hagelsieb
PloS one 9 (7), e101850, 2014
1182014
Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways
M Babu, JJ Díaz-Mejía, J Vlasblom, A Gagarinova, S Phanse, C Graham, ...
PLoS Genet 7 (11), e1002377, 2011
992011
Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli
M Babu, R Arnold, C Bundalovic-Torma, A Gagarinova, KS Wong, ...
PLoS Genet 10 (2), e1004120, 2014
962014
A metagenomic framework for the study of airborne microbial communities
S Yooseph, C Andrews-Pfannkoch, A Tenney, J McQuaid, S Williamson, ...
PloS one 8 (12), e81862, 2013
962013
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