Jemma L Geoghegan
Jemma L Geoghegan
University of Otago; ESR; Rutherford Discovery Fellow
Adresse e-mail validée de otago.ac.nz
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Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families
JL Geoghegan, S Duchêne, EC Holmes
PLoS pathogens 13 (2), e1006215, 2017
1502017
Predicting virus emergence amid evolutionary noise
JL Geoghegan, EC Holmes
Open biology 7 (10), 170189, 2017
972017
Population-epigenetic models of selection
JL Geoghegan, HG Spencer
Theoretical population biology 81 (3), 232-242, 2012
892012
Virological factors that increase the transmissibility of emerging human viruses
JL Geoghegan, M Senior, Alistair, F Di Giallonardo, EC Holmes
Proceedings of the National Academy of Science in the USA, 2016
842016
The phylogenomics of evolving virus virulence
JL Geoghegan, EC Holmes
Nature Reviews Genetics 19 (12), 756-769, 2018
602018
Phylodynamics of enterovirus A71-associated hand, foot, and mouth disease in Viet Nam
JL Geoghegan, LV Tan, D Kühnert, RA Halpin, X Lin, A Simenauer, ...
Journal of virology 89 (17), 8871-8879, 2015
542015
Contact Heterogeneity, Rather Than Transmission Efficiency, Limits the Emergence and Spread of Canine Influenza Virus
BD Dalziel, K Huang, JL Geoghegan, N Arinaminpathy, EJ Dubovi, ...
PLOS Pathogens 10 (10), e1004455, 2014
482014
Pathogen population bottlenecks and adaptive landscapes: overcoming the barriers to disease emergence
JL Geoghegan, AM Senior, EC Holmes
Proceedings of the Royal Society B: Biological Sciences 283 (1837), 20160727, 2016
442016
Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand
JL Geoghegan, X Ren, M Storey, J Hadfield, L Jelley, S Jefferies, ...
Nature communications 11 (1), 1-7, 2020
382020
Fluid spatial dynamics of West Nile virus in the United States: Rapid spread in a permissive host environment
F Di Giallonardo, JL Geoghegan, DE Docherty, RG McLean, MC Zody, ...
Journal of virology 90 (2), 862-872, 2016
382016
Transgenerational epigenetics
Elsevier, 2014
37*2014
Seasonal Drivers of the Epidemiology of Arthropod-Borne Viruses in Australia
JL Geoghegan, PJ Walker, JB Duchemin, I Jeanne, EC Holmes
PLOS Neglected Tropical Diseases 8 (11), e3325, 2014
362014
Exploring epiallele stability in a population-epigenetic model
JL Geoghegan, HG Spencer
Theoretical Population Biology 83, 136–144, 2012
322012
Evolutionary virology at 40
JL Geoghegan, EC Holmes
Genetics 210 (4), 1151-1162, 2018
302018
A generic assay for whole-genome amplification and deep sequencing of enterovirus A71
NTK Tuyen, TT Thanh, TT Ngan, HMT Van, S Sabanathan, TTM Van, ...
Journal of virological methods 215, 30-36, 2015
292015
Continental synchronicity of human influenza virus epidemics despite climactic variation
JL Geoghegan, AF Saavedra, S Duchêne, S Sullivan, I Barr, EC Holmes
PLoS pathogens 14 (1), e1006780, 2018
282018
Recommendations for ecotoxicity testing with stygobiotic species in the framework of groundwater environmental risk assessment
T Di Lorenzo, WD Di Marzio, B Fiasca, DMP Galassi, K Korbel, S Iepure, ...
Science of the Total Environment 681, 292-304, 2019
27*2019
Estimating evolutionary rates using time-structured data: a general comparison of phylogenetic methods
S Duchêne, JL Geoghegan, EC Holmes, SYW Ho
Bioinformatics, 2016
272016
Virological sampling of inaccessible wildlife with drones
JL Geoghegan, V Pirotta, E Harvey, A Smith, JP Buchmann, M Ostrowski, ...
Viruses 10 (6), 300, 2018
262018
Hidden diversity and evolution of viruses in market fish
JL Geoghegan, F Di Giallonardo, K Cousins, M Shi, JE Williamson, ...
Virus evolution 4 (2), vey031, 2018
232018
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