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Jason Buenrostro
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Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
JD Buenrostro, PG Giresi, LC Zaba, HY Chang, WJ Greenleaf
Nature methods 10 (12), 1213-1218, 2013
57442013
ATAC‐seq: a method for assaying chromatin accessibility genome‐wide
JD Buenrostro, B Wu, HY Chang, WJ Greenleaf
Current protocols in molecular biology 109 (1), 21.29. 1-21.29. 9, 2015
30252015
Single-cell chromatin accessibility reveals principles of regulatory variation
JD Buenrostro, B Wu, UM Litzenburger, D Ruff, ML Gonzales, MP Snyder, ...
Nature 523 (7561), 486-490, 2015
19622015
Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution
MR Corces, JD Buenrostro, B Wu, PG Greenside, SM Chan, JL Koenig, ...
Nature genetics 48 (10), 1193-1203, 2016
10342016
chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data
AN Schep, B Wu, JD Buenrostro, WJ Greenleaf
Nature methods 14 (10), 975-978, 2017
10032017
Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types
HK Finucane, YA Reshef, V Anttila, K Slowikowski, A Gusev, A Byrnes, ...
Nature genetics 50 (4), 621-629, 2018
8392018
Chromatin potential identified by shared single-cell profiling of RNA and chromatin
S Ma, B Zhang, LM LaFave, AS Earl, Z Chiang, Y Hu, J Ding, A Brack, ...
Cell 183 (4), 1103-1116. e20, 2020
6142020
Integrated single-cell analysis maps the continuous regulatory landscape of human hematopoietic differentiation
JD Buenrostro, MR Corces, CA Lareau, B Wu, AN Schep, MJ Aryee, ...
Cell 173 (6), 1535-1548. e16, 2018
6022018
Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries
ML Carpenter, JD Buenrostro, C Valdiosera, H Schroeder, ME Allentoft, ...
The American Journal of Human Genetics 93 (5), 852-864, 2013
4272013
Lineage tracing in humans enabled by mitochondrial mutations and single-cell genomics
LS Ludwig, CA Lareau, JC Ulirsch, E Christian, C Muus, LH Li, K Pelka, ...
Cell 176 (6), 1325-1339. e22, 2019
3832019
Induction and transcriptional regulation of the co-inhibitory gene module in T cells
N Chihara, A Madi, T Kondo, H Zhang, N Acharya, M Singer, J Nyman, ...
Nature 558 (7710), 454-459, 2018
3792018
Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility
CA Lareau, FM Duarte, JG Chew, VK Kartha, ZD Burkett, AS Kohlway, ...
Nature Biotechnology 37 (8), 916-924, 2019
3592019
Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions
AN Schep, JD Buenrostro, SK Denny, K Schwartz, G Sherlock, ...
Genome research 25 (11), 1757-1770, 2015
3502015
The cis-regulatory atlas of the mouse immune system
H Yoshida, CA Lareau, RN Ramirez, SA Rose, B Maier, A Wroblewska, ...
Cell 176 (4), 897-912. e20, 2019
3082019
Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram
T Biancalani, G Scalia, L Buffoni, R Avasthi, Z Lu, A Sanger, N Tokcan, ...
Nature methods 18 (11), 1352-1362, 2021
2832021
Transposition of native chromatin for personal epigenomics
P Giresi, JD Buenrostro, HY Chang, WJ Greenleaf
US Patent 10,059,989, 2018
2572018
Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes
JD Buenrostro, CL Araya, LM Chircus, CJ Layton, HY Chang, MP Snyder, ...
Nature biotechnology 32 (6), 562-568, 2014
2462014
Assessment of computational methods for the analysis of single-cell ATAC-seq data
H Chen, C Lareau, T Andreani, ME Vinyard, SP Garcia, K Clement, ...
Genome biology 20 (1), 1-25, 2019
2422019
Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM
H Chen, L Albergante, JY Hsu, CA Lareau, G Lo Bosco, J Guan, S Zhou, ...
Nature communications 10 (1), 1903, 2019
2172019
ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing
X Chen, Y Shen, W Draper, JD Buenrostro, U Litzenburger, SW Cho, ...
Nature methods 13 (12), 1013-1020, 2016
2172016
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Articles 1–20