Simona Cocco
Simona Cocco
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Neuronal couplings between retinal ganglion cells inferred by efficient inverse statistical physics methods
S Cocco, S Leibler, R Monasson
Proceedings of the National Academy of Sciences 106 (33), 14058-14062, 2009
Overstretching and force-driven strand separation of double-helix DNA
S Cocco, J Yan, JF Léger, D Chatenay, JF Marko
Physical Review E 70 (1), 011910, 2004
Force and kinetic barriers to unzipping of the DNA double helix
S Cocco, R Monasson, JF Marko
Proceedings of the National Academy of Sciences 98 (15), 8608-8613, 2001
Helicoidal model for DNA opening
M Barbi, S Cocco, M Peyrard
Physics Letters A 253 (5-6), 358-369, 1999
Inverse statistical physics of protein sequences: a key issues review
S Cocco, C Feinauer, M Figliuzzi, R Monasson, M Weigt
Reports on Progress in Physics 81 (3), 032601, 2018
Statistical mechanics of torque induced denaturation of DNA
S Cocco, R Monasson
Physical Review Letters 83 (24), 5178, 1999
Adaptive cluster expansion for inferring Boltzmann machines with noisy data
S Cocco, R Monasson
Physical review letters 106 (9), 090601, 2011
From principal component to direct coupling analysis of coevolution in proteins: Low-eigenvalue modes are needed for structure prediction
S Cocco, R Monasson, M Weigt
PLoS computational biology 9 (8), e1003176, 2013
Rigorous decimation-based construction of ground pure states for spin-glass models on random lattices
S Cocco, O Dubois, J Mandler, R Monasson
Physical review letters 90 (4), 047205, 2003
An evolution-based model for designing chorismate mutase enzymes
WP Russ, M Figliuzzi, C Stocker, P Barrat-Charlaix, M Socolich, P Kast, ...
Science 369 (6502), 440-445, 2020
Direct-Coupling Analysis of nucleotide coevolution facilitates RNA secondary and tertiary structure prediction
E De Leonardis, B Lutz, S Ratz, S Cocco, R Monasson, A Schug, M Weigt
Nucleic acids research 43 (21), 10444-10455, 2015
A twist opening model for DNA
M Barbi, S Cocco, M Peyrard, S Ruffo
Journal of Biological Physics 24 (2), 97-114, 1999
Slow nucleic acid unzipping kinetics from sequence-defined barriers
S Cocco, JF Marko, R Monasson
The European Physical Journal E 10 (2), 153-161, 2003
ACE: adaptive cluster expansion for maximum entropy graphical model inference
JP Barton, E De Leonardis, A Coucke, S Cocco
Bioinformatics 32 (20), 3089-3097, 2016
Theoretical study of collective modes in DNA at ambient temperature
S Cocco, R Monasson
The Journal of Chemical Physics 112 (22), 10017-10033, 2000
Learning protein constitutive motifs from sequence data
J Tubiana, S Cocco, R Monasson
Elife 8, e39397, 2019
Force and kinetic barriers to initiation of DNA unzipping
S Cocco, R Monasson, JF Marko
Physical Review E 65 (4), 041907, 2002
Adaptive cluster expansion for the inverse Ising problem: convergence, algorithm and tests
S Cocco, R Monasson
Journal of Statistical Physics 147 (2), 252-314, 2012
The micromechanics of DNA
JF Marko, S Cocco
Physics World 16 (3), 37, 2003
Trajectories in phase diagrams, growth processes, and computational complexity: How search algorithms solve the 3-satisfiability problem
S Cocco, R Monasson
Physical review letters 86 (8), 1654, 2001
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