Kenneth Barr
Kenneth Barr
John Reinitz Lab - The University of Chicago
Adresse e-mail validée de uchicago.edu
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Elevated and sustained expression of the transcription factors Egr1 and Egr2 controls NKT lineage differentiation in response to TCR signaling
MP Seiler, R Mathew, MK Liszewski, CJ Spooner, K Barr, F Meng, ...
Nature immunology 13 (3), 264-271, 2012
1732012
PLZF induces an intravascular surveillance program mediated by long-lived LFA-1–ICAM-1 interactions
SY Thomas, ST Scanlon, KG Griewank, MG Constantinides, AK Savage, ...
Journal of Experimental Medicine 208 (6), 1179-1188, 2011
1492011
Egr2-dependent gene expression profiling and ChIP-Seq reveal novel biologic targets in T cell anergy
Y Zheng, Y Zha, RM Spaapen, R Mathew, K Barr, A Bendelac, ...
Molecular immunology 55 (3-4), 283-291, 2013
392013
Aristaless controls butterfly wing color variation used in mimicry and mate choice
EL Westerman, NW VanKuren, D Massardo, A Tenger-Trolander, ...
Current Biology 28 (21), 3469-3474. e4, 2018
342018
A synthetic biology approach to the development of transcriptional regulatory models and custom enhancer design
CA Martinez, KA Barr, AR Kim, J Reinitz
Methods 62 (1), 91-98, 2013
132013
Synthetic enhancer design by in silico compensatory evolution reveals flexibility and constraint in cis-regulation
KA Barr, C Martinez, JR Moran, AR Kim, AF Ramos, J Reinitz
BMC Systems Biology 11 (1), 116, 2017
82017
Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis
CJ Hsiao, PY Tung, JD Blischak, JE Burnett, KA Barr, KK Dey, ...
Genome research 30 (4), 611-621, 2020
72020
A sequence level model of an intact locus predicts the location and function of nonadditive enhancers
KA Barr, J Reinitz
PLoS One 12 (7), e0180861, 2017
62017
Fully interpretable deep learning model of transcriptional control
Y Liu, K Barr, J Reinitz
Bioinformatics 36 (Supplement_1), i499-i507, 2020
32020
An in silico analysis of robust but fragile gene regulation links enhancer length to robustness
K Barr, J Reinitz, O Radulescu
PLoS computational biology 15 (11), e1007497, 2019
22019
Decoding CIS-Regulation of the Drosophila Even-Skipped Locus with Physical-Chemical Models and Synthetic Enhancers
KA Barr
The University of Chicago, 2017
12017
Elevated and sustained expression of the transcription factors Egr1 and Egr2 controls NKT lineage differentiation in response to TCR signaling
MP Seiler, R Mathew, MK Liszewski, C Spooner, K Barr, F Meng, H Singh, ...
Nature immunology 14 (4), 413, 2013
12013
Divergence in alternative polyadenylation contributes to gene regulatory differences between humans and chimpanzees
BE Mittleman, S Pott, S Warland, K Barr, C Cuevas, Y Gilad
bioRxiv, 2020
2020
A sequence level model of an intact locus predicts the location and function of nonadditive enhancers (vol 12, e0180861, 2017)
KA Barr, J Reinitz
PLOS ONE 13 (5), 2018
2018
Correction: A sequence level model of an intact locus predicts the location and function of nonadditive enhancers
KA Barr, J Reinitz
PloS one 13 (5), e0197211, 2018
2018
TCR signaling drives early growth response 2 gene expression and enforces natural killer T cell lineage commitment (153.40)
M Seiler, R Mathew, C Spooner, K Barr, H Singh, A Bendelac
The Journal of Immunology 186 (1 Supplement), 153.40-153.40, 2011
2011
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